Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1085 ATGCAGCTTCTTCTTCTCCTCTTTCTCCTTCTTCACCTCCATATCCATCTCTCCATTTCCTCTCACTTGCCGGAATATCGCGCTCTTCTCTCGCTGAAGAGCTCCCTTTCCGATGATTCCCAATCGCCGCTCTCCACTTGGGATCCTGCCACCGCCCACTGTACTTGGACTGGAGTCACCTGCGATTTTCGCCGCCACGTCGTCTCCCTCGACCTCTCCGGGATGAATCTCTCCGGTACTCTCTCTCCTGACCTGGGCAGTCTCCGATTTCTCGCTAATCTCTCCGTTGCGGCTAATCTGATTTCCGGCCCGATTCCGCTCGAGATCTCTGCCATCTCTACGCTTAAATCCCTTAACCTTTCTAACAATCTGATTAATGGCACATTCCCCTTGGAACTCTCCTTGCTCAAGAGTCTGGAGGTTCTTGATTTGTATAACAACAATATGTCTGGGAACTTGCCGCTTGCGGTCGTCGACTTGCCGAATCTTCGCCATTTGCATCTCGGCGGGAACTTCTTCTCCGGCGTTATTCCGCCGGAGTACGGACGGTGGCAGTTCATAGAGTACTTGGCGGTTTCTGGAAATGAGCTTCAAGGCCCGATTCCGCCGGAGATTGGTAATCTGACGACGCTTCGTGAACTTTACATTGGGTATTACAATACCTACGATGGCGGTTTGCCGCCGGAGATCGGAAACTTATCGGAACTGGTTCGATTGGATGCTGCAAACTGTGGGTTAACGGGTGAGATTCCTCGCGAACTTGGGAAGCTTCAGAAATTAGATACTCTGTTTCTTCAGGTGAACGGTTTTTCTGGGCCTTTGATTCCAGAGCTTGGGAGCTTGAAGGAATTGAAATCCATGGATTTGTCTAACAACATTCTCGTTGGTGAGATTCCGGACTCATTCTCTCAACTGAAGAACTTGACGCTTTTGCATCTTTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTGCCGGAGTTGGAAGTGTTGCAGTTGTGGGAAAACAACTTCACTGGTTCCATTCCCTATAGTTTAGGGAAGAATGGGAAGCTCGTTGTTCTCGACATTTCATCGAACAAATTGACTGGAACTTTACCTCCTGATATGTGCCATGGAAATCGACTTCAAACTCTGATTACACTCGGCAATTTCTTATTCGGTCCAATCCCTGAATCTCTCGGTAAATGCGAGTCGTTGAGCCGTATTCGAATGGGGGAAAATTTTCTCAATGGTTCAATCCCAAAGGGTCTCTTCGGTTTGCCAAATCTATCCCAAGTTGAGTTGCAGAACAATTTTCTCACCGGAGAATTTCCAGTCACTGATTCCGTCTCTGCAAATCTCGGCCAGATTAGTCTCTCTAACAATCGGCTCTCGGGGTCTCTACCACCGATGGTGGGAAATTTCTCCGGCGTCCAGAAGCTTCTCCTGGACGGGAACAAATTCTCCGGCCAAATCCCACCTGAAATCGGGCGGTTACAACAGCTTTCAAAGATTGATTTCAGTCACAACCAATTCTCCGGCCAAATAGCGCCGGAAATCAGCCAATGTAAGCTCTTAACCTTCGTCGATCTCAGTCGCAACGAGCTCTCCGGTGAGATTCCGAACGAAATCACCACAATGAGGATACTGAACTATCTGAATCTCTCAAGAAACCATTTAATCGGAAGCGTTCCTGTCTCAATATCCTCAATGCAGAGCTTAACATCCGTTGATTTTTCATATAACAATCTCTCCGGTTTGGTTCCGGGCACCGGCCAGTTCAGCTACTTCAACTACACCTCATTTCTAGGCAACCCAGATCTCTGCGGCCCTTATTTGGGACCTTGCAAAGATGGGGTCGGCAATGGCACTCAACAGCCCCATTTAAAAGGCACTCTCTCTGCCTCTGTGAAACTTCTGCTTGTCATCGTCTTGCTCGTATGCTCGATCGCATTTGCAATTGCAGCGATCATCAAAGCTCGGTCTCTAAAACGAGCGAGTGAGTCCCGAGCTTGGAAACTAACCGCATTCCAAAGATTAGATTTCACAGTAGATGACATTTTGGATTGCTTGAAAGAGGACAACATAATAGGGAAGGGAGGCGCCGGCATTGTGTACAAAGGTTTTATGCCGAGCGGCGAACATGTCGCCGTGAAAAGGCTACCGGCGATGGGCCGAGGGTCGTCCCATGACCATGGATTCAATGCTGAGATACAGACTCTGGGGAGGATTAAACATCGTCACATTGTTAGATTATTGGGATTCTGTTCTAACCATGAAACTAATCTTCTGGTTTATGAGTATATGCCTAATGGGAGTTTAGGGGAAGTTCTGCACGGGAAGAAAGGTGGGCATTTGCAGTGGGATACAAGGTATAAGATCGCCATTGAAGCTGCTAAAGGTCTTTGTTATTTGCATCATGACTGTTCGCCATTGATTGTTCATCGAGATGTGAAATCAAACAATATTCTTCTGGATTCTGATTATGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCGGGCACATCAGAGTGTATGTCCGCCATAGCTGGTTCCTACGGATACATAGCTCCAGAATATGCTTATACATTGAAAGTCGACGAGAAGAGCGATGTCTACAGCTTTGGAGTAGTACTCCTGGAGCTTGTGAGTGGGCGAAAGCCAGTCGGAGAATTCGGTGACGGAGTCGACATAGTTCAATGGGTCAGAAAAATGACCGGCCCCAACAACGAAGGGGTAGTAAAAATCATCGATCCACGGCTCTCCTCAGTCCCACTCAACGAAGTAACTCACATGTTCTACATAGCAATGCTATGTGTAGAAGACCAGGCCGTGGAGAGACCAACAATGAGAGAAGTGGTTCAAATCCTCACAGAACTCCCAAAAGCACCAACTTCAAAGCAAGTAGACTCGAAAGAAGCCGAAGCAACATCCCTGTCGCTACCGCCATTGTCGCCACCGCCGCTGCCACCACCGGGGGTGGCGGCATTAGATTCACCAAAGAAAAGGCAGGCACCACCGGATCTTCTGAGCATTTGA 3048 48.0 MQLLLLLFLLLHLHIHLSISSHLPEYRALLSLKSSLSDDSQSPLSTWDPATAHCTWTGVTCDFRRHVVSLDLSGMNLSGTLSPDLGSLRFLANLSVAANLISGPIPLEISAISTLKSLNLSNNLINGTFPLELSLLKSLEVLDLYNNNMSGNLPLAVVDLPNLRHLHLGGNFFSGVIPPEYGRWQFIEYLAVSGNELQGPIPPEIGNLTTLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLTGEIPRELGKLQKLDTLFLQVNGFSGPLIPELGSLKELKSMDLSNNILVGEIPDSFSQLKNLTLLHLFRNKLHGAIPQFIGELPELEVLQLWENNFTGSIPYSLGKNGKLVVLDISSNKLTGTLPPDMCHGNRLQTLITLGNFLFGPIPESLGKCESLSRIRMGENFLNGSIPKGLFGLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPPMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNQFSGQIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPVSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVGNGTQQPHLKGTLSASVKLLLVIVLLVCSIAFAIAAIIKARSLKRASESRAWKLTAFQRLDFTVDDILDCLKEDNIIGKGGAGIVYKGFMPSGEHVAVKRLPAMGRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTGPNNEGVVKIIDPRLSSVPLNEVTHMFYIAMLCVEDQAVERPTMREVVQILTELPKAPTSKQVDSKEAEATSLSLPPLSPPPLPPPGVAALDSPKKRQAPPDLLSI 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12136941 12141071 - Maker00029855 Lcy6g1085 635529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1085 1015 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Lcy6g1085 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1085 1015 SMART LRR_typ_2 281 305 IPR003591 -
Lcy6g1085 1015 SMART LRR_typ_2 160 184 IPR003591 -
Lcy6g1085 1015 SMART LRR_typ_2 354 377 IPR003591 -
Lcy6g1085 1015 SMART LRR_typ_2 569 592 IPR003591 -
Lcy6g1085 1015 SMART LRR_typ_2 136 159 IPR003591 -
Lcy6g1085 1015 SMART LRR_typ_2 329 353 IPR003591 -
Lcy6g1085 1015 SMART LRR_typ_2 497 521 IPR003591 -
Lcy6g1085 1015 Gene3D Transferase(Phosphotransferase) domain 1 767 983 - -
Lcy6g1085 1015 SMART serkin_6 689 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1085 1015 SUPERFAMILY Protein kinase-like (PK-like) 682 960 IPR011009 -
Lcy6g1085 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Lcy6g1085 1015 Gene3D Ribonuclease Inhibitor 132 220 IPR032675 -
Lcy6g1085 1015 Gene3D Ribonuclease Inhibitor 221 320 IPR032675 -
Lcy6g1085 1015 SUPERFAMILY RNI-like 69 391 - -
Lcy6g1085 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Lcy6g1085 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 977 - -
Lcy6g1085 1015 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Lcy6g1085 1015 Gene3D Ribonuclease Inhibitor 24 131 IPR032675 -
Lcy6g1085 1015 Gene3D Ribonuclease Inhibitor 326 618 IPR032675 -
Lcy6g1085 1015 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 963 IPR050647 -
Lcy6g1085 1015 MobiDBLite consensus disorder prediction 966 1015 - -
Lcy6g1085 1015 Gene3D Phosphorylase Kinase; domain 1 654 766 - -
Lcy6g1085 1015 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1085 1015 MobiDBLite consensus disorder prediction 984 998 - -
Lcy6g1085 1015 Pfam Protein tyrosine and serine/threonine kinase 691 960 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1085 1015 SUPERFAMILY L domain-like 298 614 - -
Lcy6g1085 1015 Pfam Leucine Rich Repeat 162 182 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 115 134 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 332 352 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 355 375 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 138 156 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Lcy6g1085 1015 Pfam Leucine Rich Repeat 524 544 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0021 Lcy-Chr1:190798 Lcy6g1085 Lcy-Chr6:12136941 1.51E-165 dispersed
Lcy1g0870 Lcy-Chr1:7482960 Lcy6g1085 Lcy-Chr6:12136941 3.58E-237 dispersed
Lcy1g0871 Lcy-Chr1:7511055 Lcy6g1085 Lcy-Chr6:12136941 2.83E-166 dispersed
Lcy6g0288 Lcy-Chr6:2663187 Lcy6g1085 Lcy-Chr6:12136941 7.34E-89 dispersed
Lcy6g1085 Lcy-Chr6:12136941 Lcy6g1176 Lcy-Chr6:13688637 7.19E-155 dispersed
Lcy6g1083 Lcy-Chr6:12087105 Lcy6g1085 Lcy-Chr6:12136941 2.63E-78 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66032 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1085 - - - 0.0