Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1092 ATGGACATCAACAATTCTTCGAGACTATTCAACGTCACGCTGCAAAGAAAAAGTGGATATGTTATAATGGATAATGGCATTGTCCAAGTTACTCTTTCAACTCCCGATGGCGACATGGTTGGATTGAGCTACAATGGAATCGAAAACCTTCTCGAAACCAAAAACGAAGAGCAAAATAGAGGCTATTGGGACGCCGTATGGAACAACCCAAACGAACCCATCTCCACTGACAGATTAAAAGGAACGAGCTTTGAAGTGATAATAGCAAACGAGGAACAACTCGAAATCTCCTTCAACAAAACATGGAGCTTTGCAGTTGGGAACGAGACGGCTCCTGTAAATGTGGACAAAAGGTACGTAATGGTGAGAGGAAGCTCGGGGATTTACACGTATGCTATATTCGAGAGGCCCACGGGCTGGCCCGAGATTGAAATGGATCAAGTGAGGACTGTTTTCAAGCTTCAGAGCAAAATGTTTGATTACATGGCTGTATCGGACGACAGGCAGAGGGTGATGCCGACGATGGCCGACCGTGAAAATGGTGAGCCGTTGGCGTATCCTGAGGCTGTTCTCTTGACCAATCCTGCCAACGACCAACTTAGAGGAGAGGTGGATGACAAGTACCAGTACTCAATAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGTGACGAGTTCCGCGTCGCCGGCCCGGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCTATGTTCGTTAGCACCCACTACGCTGGAAAGGACGTTGGTATGAAATTTGCAGCCGGAGAGCCTTGGAAGAAGGTCTTTGGCCCTGTCTTTGTCTATGTCAACTCTGTTTCCCCTGAAGAGGATTCTCTTTCTCTCTGGCAAGATGCCAAGCAACAGTTGGCAGTGGAAATCAGTGAATGGCCGTATACTTTTCCTCAATCTGCTGACTTCCCTTCTTCTGCTCAAAGAGGGAGCGTCGCTGGCCGGTTATTAGTCCGCGATGGGTATATCAGTAGCAGACTGATGCGTGCAAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTCGGATCTTGGCAAAGGGAAAGCAAGGGATATCAGTTCTGGACTCGAGCTGATAATCACGGAAACTTCTTAATAAAAAACATCCGAGCTGGGGATTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGATTACAAATACGAGGCAAATATTACAGTCGAGCCTGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCCGCCAAGACAAGGCCCAACCATCTGGGAGATTGGCCTTCCCGACCGTACTGCGGCGGAGTTTTACGTGCCCAACCCTTATCCGACTCTCATGAATAAACTATACAACAACCAAGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATGATTATAGCCAGGACTGGTTCTATGCTCATGTTACCAGGAATGTGGGGAATCAAACATACGAAGCAACCACTTGGGAGATCAGATTCTTATTGCAATCTGTGAACAAAACTGGAAATTACACACTGCAAATTGCATTGGCATCTGCTGCTGAATGCGAATTACAGGTTCGATTGAACGATCGAGAGTCAGACCAGGCCACTTTCTCAACAGGGAGGATCGGAAAGGACAATGCGATTGCAAGGCATGGCATCCATGGACTTTACTGGTTATACTCCATACCTTTTGCTGGGGATCAATTTCTGCAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCCCAGGTCTCATGTATGACTACATTCGACTCGAAGCTCCACCTCTAACATGA 1917 47.52 MDINNSSRLFNVTLQRKSGYVIMDNGIVQVTLSTPDGDMVGLSYNGIENLLETKNEEQNRGYWDAVWNNPNEPISTDRLKGTSFEVIIANEEQLEISFNKTWSFAVGNETAPVNVDKRYVMVRGSSGIYTYAIFERPTGWPEIEMDQVRTVFKLQSKMFDYMAVSDDRQRVMPTMADRENGEPLAYPEAVLLTNPANDQLRGEVDDKYQYSIEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDVGMKFAAGEPWKKVFGPVFVYVNSVSPEEDSLSLWQDAKQQLAVEISEWPYTFPQSADFPSSAQRGSVAGRLLVRDGYISSRLMRASNAFVGLALPGPVGSWQRESKGYQFWTRADNHGNFLIKNIRAGDYNLYAFVPGFIGDYKYEANITVEPGSEIRLDVMVFDPPRQGPTIWEIGLPDRTAAEFYVPNPYPTLMNKLYNNQADKFRQYGLWERYAAMYPNNDLVFTVGVDDYSQDWFYAHVTRNVGNQTYEATTWEIRFLLQSVNKTGNYTLQIALASAAECELQVRLNDRESDQATFSTGRIGKDNAIARHGIHGLYWLYSIPFAGDQFLQGNNSIYLTQARSESPFPGLMYDYIRLEAPPLT 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12258211 12263564 + Maker00030077 Lcy6g1092 635536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1092 638 Pfam Rhamnogalacturonate lyase family 12 204 IPR010325 -
Lcy6g1092 638 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
Lcy6g1092 638 Gene3D - 442 633 - -
Lcy6g1092 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 636 IPR051850 -
Lcy6g1092 638 CDD RGL4_C 446 633 - -
Lcy6g1092 638 FunFam Rhamnogalacturonate lyase B 332 431 - -
Lcy6g1092 638 SUPERFAMILY Galactose mutarotase-like 24 296 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lcy6g1092 638 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
Lcy6g1092 638 SUPERFAMILY Galactose-binding domain-like 442 633 IPR008979 -
Lcy6g1092 638 Gene3D - 10 302 IPR014718 GO:0030246(InterPro)
Lcy6g1092 638 Gene3D - 332 434 - -
Lcy6g1092 638 CDD RGL4_M 335 431 IPR029413 -
Lcy6g1092 638 SUPERFAMILY Starch-binding domain-like 333 434 IPR013784 GO:0030246(InterPro)
Lcy6g1092 638 CDD RGL4_N 18 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1092 Lcy-Chr6:12258211 Lcy9g1668 Lcy-Chr9:41877014 1.14E-243 dispersed
Lcy1g0848 Lcy-Chr1:7246762 Lcy6g1092 Lcy-Chr6:12258211 8.94E-295 wgd
Lcy6g1092 Lcy-Chr6:12258211 Lcy9g1667 Lcy-Chr9:41867094 6.60E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1092 K18195 - csv:101215252 1195.26