Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1105 ATGGCTCCGGCGACTAACTGGCTTTCCTTTTCGCTCTCTCCCATCGAAATGCTTCGCTCTGCGGACTCTCAGTTCGTTCCTTATGAAACTTCCTCCACCGCCTCTCCTCACTATCTCTTAGACAATTTCTACTCTAATAATGGATGGAGTAATAGTACTAATTCTCACCCAAAATCATCGCAACTTTTCTTCATGGATGGAGATGAAAATAACGAAGTTGTCAAAGAAGGTCATCATCATCATCATCATCAATCAACGCCCGCCATTTTCACGAGCTTTCTTCATCCACAAACCCACCACCAACCCAAGCTCGAAGATTTCCTCGGCGAAGTGAGGTATTCCGACAGCCAAACGGAGACCCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCGGCGGCCTATTTCGGCGACCAACAGGATCTCAAAACCATTGCGGCGTTTCAAGCCTTTTCCGCCAACTCCGGCTCTGAAGTTGACGATTCGGCTTCTATTGCCAGAACCCAGATCGCCGCCGCCGAGATCCCCGCCGCTGCTCATTCTATTGAGTCGTCGGTCAGAAATGAGTTGGGGAGTTTCTCTAACTGCCCCACGGGTGCTCTGTCCCTCGCCGTCGCCCAGAGCTCCGACACGGTGGCGGCTGCGGCTGTTGTGGCGGCGGTTGATTCCGATTCGTCGAAGAAAATTGCTGATACTTTTGGCCAGCGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGATATGATAAGGAAGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTCTGAAGTACTGGGGTCCAACTGCAACCACCAATTTTCTTGTTTCGAATTACACCAAAGAATTGGAAGAGATGAAGCATGTCACCAAGCAAGAGTTCATCGCTTCTTTGCGAAGAAAAAGCAGTGGTTTCTCGAGGGGTGCGTCTATTTACAGAGGTGTAACGAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGTCGTGTTGCTGGGAATAAGGACCTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCCGAGGCATACGATATAGCAGCGATCAAGTTCAGGGGTTTGAATGCCGTGACGAACTTCGAGATGAGTCGATATGACGTGGAAGCTATTGCAAAGAGTGCGCTACCGATTGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTCGAATCGGATCAGAAGCCAATTCCAAATCATGATCAAACAGCCGCCCAGTGCAGCAGTGGAAGCAACAGCATCAACTTTGGCTCCTCCATTCAAGCTGTGCCACCTATCCCCTGTGGAATTCCATACGATACTGCGGCTGTGCTGTATCACCACAATTACTTCCACCATCTTCAACCTAACGCCATCGGTTCTTCGGAGTCGACCAGTCCAGCCATTGCAGCGTCGACCGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1551 50.35 MAPATNWLSFSLSPIEMLRSADSQFVPYETSSTASPHYLLDNFYSNNGWSNSTNSHPKSSQLFFMDGDENNEVVKEGHHHHHHQSTPAIFTSFLHPQTHHQPKLEDFLGEVRYSDSQTETQDSSLTHIYDHGSAAYFGDQQDLKTIAAFQAFSANSGSEVDDSASIARTQIAAAEIPAAAHSIESSVRNELGSFSNCPTGALSLAVAQSSDTVAAAAVVAAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFLVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPNHDQTAAQCSSGSNSINFGSSIQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPAIAASTVAPQAAEFFVWPHQSY 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12454166 12459045 + Maker00030001 Lcy6g1105 635549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1105 516 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 135 433 - -
Lcy6g1105 516 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 FunFam AP2-like ethylene-responsive transcription factor ANT 239 305 - -
Lcy6g1105 516 CDD AP2 239 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 ProSiteProfiles AP2/ERF domain profile. 240 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 CDD AP2 338 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 SUPERFAMILY DNA-binding domain 239 305 IPR016177 GO:0003677(InterPro)
Lcy6g1105 516 SMART rav1_2 240 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 SMART rav1_2 339 403 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 SUPERFAMILY DNA-binding domain 338 399 IPR016177 GO:0003677(InterPro)
Lcy6g1105 516 Gene3D AP2/ERF domain 240 304 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 Pfam AP2 domain 340 389 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1105 516 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0293 Lcy-Chr2:2320646 Lcy6g1105 Lcy-Chr6:12454166 2.31E-96 dispersed
Lcy4g1350 Lcy-Chr4:32415061 Lcy6g1105 Lcy-Chr6:12454166 3.69E-113 dispersed
Lcy6g1105 Lcy-Chr6:12454166 Lcy8g2105 Lcy-Chr8:47235768 1.62E-105 dispersed
Lcy10g0392 Lcy-Chr10:8243982 Lcy6g1105 Lcy-Chr6:12454166 4.40E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20300 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1105 K09285 - csv:101217714 770.0