Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1111 ATGCAGCTTTCAGCTGTCAAGTCATTGTGCTGCATAGGAGTTTCGTTGTTCCAGTGTCAAGATCCCAGCATTTTTTTAGTGTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTATCCTGTCGTCCTGGACCCTGGAGGAACCATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCAATAACATACGGTTACTGAGTGCAGCCAGTCCGCCGCCTCTTTCATTTCAGCAGAAGAACACTTGGAGCACTCATTTATTTAGTATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTGTTTAGGTGCCATTCGTCATTGATGACAGACCAACCACTGGATCCCCCTGGAATGAAGGCTGCTATAGTGGCATTGACAAGAAAAAGACAAGTCTGGAAAGCATATTTGCAGGGGCTGATTATCACACCAGCAATCTTCCCAGAATCTGATGCTTTTCCTGCACTTGGCTGTGAATTTTGTAAACTGATTGAAGGTTGGATAGTTGTTGGCAATGTAGCCGATCACACTCGTAGTGTTGCAAAGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTAGTTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACTAGAAGCCTACTCCATAGTGATAATAACTGGAAAAAAAGTCGGACATATAAAGTCATGACCTTCTATCTTCAACCATTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTGGATCGAGTAGTTTTACCTACAGGGTCTAGCCAAGTTGTGAAGCAACGGGTATTGAATTTTGTTAGGTCGTTGTCCACTGTGCTGGCCTTCGCTTATTGCTTATCAAGTATGATTCAACAAGCACAGAAGTTCTTCTCAGAGACTAGCGAATCCAGTGATGCAAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTGTTGGGCTTTTCTACCCAAAAATGGCTTACAGCTGGAGGTCTTGGCACTGTATTGTTGACATTAGCTGGCCGTGAGATCTTCACTAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTATTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGCACTGTGGAGCATGTAGGATGGTGGTCACCAACGATTATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCACAAGTTTACAGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTATCTATCAGCCATTTGGACGTCAATAAAATCAATAATATCGTTGCAGACATGCGGAAAGTCTTAGCCAAGAACCCTCAAGTTGAACAACAGAAATTGCATAGAAGAGTATTTTTGGACAACGTGGATCCTGAAAATCAGGCACTTTTGATATTGATATCATGTTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTTAAGGAAGCTATAATTTTGGATCTTCTTAGAGTTATTAGACATCACCGGGCTCGACTTGCTACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAGCGTTCCATTTGCTGATTCAATATTTGGTCGTGGTGGTGTGACTTTCAATCGTCGAATGCTGATGATTGAACCCCCCAACAAAGTTGATGGAGAAGATAAAAAGCAAAGCCATAGTAGGACATCACGGACAACTAGAGAACAAAATGGTAAGCCCATTGCACGGTCATCGGGCGACAGCAAGGCAGCTAAAGAGACCTCACCATCTGATAGAAAGACAGAAGGCAAGATTGGAGAAGTAAGAGACCCAGATACAAAAAAACATCCCAAAGTTTCAATGTCAACCTCCGAAGATAAATCTAACAATGAATTGAAACGTAAATCATCAGCAAGGCCTGATATGCCTTCTTCTGATGCCAAAACAACCAAATCAGATGCTGATAATTCATTTGAGGATTCCAGTACCAAGCAATCCGAAAATAGCTCGGGAATTAACAAGCAGAACTACAAGTCTAGCCATCCTGCTGTTTCCATTCCGGAAGATGTTAAGAAACCAGGAGGAACTTCAGCAGCTTCACAGCTAAGGATAGAAGGTGAACAGACACCAGTTTCAAGTCCATCAACAATGAAGCCTGGCGTAGAAGAGAATATAATCCTCGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCCATTGAGGAGGACATGCCTTCTTCCCCTCAAACCACATCGGGAGCGAAAGATTTGGCAGCACGCTGGAATGGGAACGGGGCGAATGGGGCAACAAACTCCGATAAGGATACGAAACGTCAGACTCCATCTTCTAGTGAATAG 2424 42.45 MQLSAVKSLCCIGVSLFQCQDPSIFLVLAMVLVGSLQLSCRPGPWRNHLHEENLKFTSQSNNIRLLSAASPPPLSFQQKNTWSTHLFSMKYPPNYTVPSRYNVFRCHSSLMTDQPLDPPGMKAAIVALTRKRQVWKAYLQGLIITPAIFPESDAFPALGCEFCKLIEGWIVVGNVADHTRSVAKFCNVLGGCPPPVVKLVPAVCIIMFAVWGLGPFLRYTRSLLHSDNNWKKSRTYKVMTFYLQPLLLWTGATLICRALDRVVLPTGSSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVINEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLSISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDLESVPFADSIFGRGGVTFNRRMLMIEPPNKVDGEDKKQSHSRTSRTTREQNGKPIARSSGDSKAAKETSPSDRKTEGKIGEVRDPDTKKHPKVSMSTSEDKSNNELKRKSSARPDMPSSDAKTTKSDADNSFEDSSTKQSENSSGINKQNYKSSHPAVSIPEDVKKPGGTSAASQLRIEGEQTPVSSPSTMKPGVEENIILGVALDGSKRTLPIEEDMPSSPQTTSGAKDLAARWNGNGANGATNSDKDTKRQTPSSSE 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12579025 12589574 + Maker00029760 Lcy6g1111 635555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1111 807 MobiDBLite consensus disorder prediction 759 807 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 614 682 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 683 704 - -
Lcy6g1111 807 Gene3D - 196 380 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 786 807 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 596 613 - -
Lcy6g1111 807 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 30 783 IPR045042 -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 575 743 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 765 779 - -
Lcy6g1111 807 Gene3D - 382 437 IPR023408 -
Lcy6g1111 807 SUPERFAMILY Sm-like ribonucleoproteins 366 436 IPR010920 -
Lcy6g1111 807 Pfam Mechanosensitive ion channel, beta-domain 366 436 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g1111 807 MobiDBLite consensus disorder prediction 723 741 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 575 595 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1111 K22047 - - csv:101217250 1009.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1478 Lcy-Chr13:33402353 Lcy6g1111 Lcy-Chr6:12579025 7.24E-93 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy11g1988 . 849 1284 Mechanosensitive Ion Channel Family AT4G00290 62.8 2.0e-152 536.6
Lcy6g1111 . 93 801 Mechanosensitive Ion Channel Family AT5G10490 55.3 4.0e-193 672.2
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.5e-86 317.4
Lcy6g1111 . 122 769 Mechanosensitive Ion Channel Family AT1G58200 51.7 3.3e-166 582.8
Lcy13g1478 . 9 309 Mechanosensitive Ion Channel Family AT1G58200 62.5 7.6e-99 359.0
Lcy8g1282 . 49 935 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.5e-267 919.1
Lcy3g0859 . 93 946 Mechanosensitive Ion Channel Family AT1G53470 51.7 7.1e-238 821.2
Lcy8g1282 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 53.7 2.0e-250 862.8
Lcy8g1282 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.8e-292 1001.9
Lcy3g0859 . 63 944 Mechanosensitive Ion Channel Family AT1G78610 57.1 8.0e-271 930.6
Lcy8g1282 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.2 5.2e-238 821.6
Lcy3g0859 . 273 943 Mechanosensitive Ion Channel Family AT2G17000 59.8 2.3e-225 779.6
Lcy8g1282 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 50.6 2.5e-163 573.2
Lcy9g1946 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 53.2 2.7e-182 636.3
Lcy2g0950 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 7.0e-199 691.4
Lcy9g1946 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 56.5 1.7e-197 686.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71