Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1111 ATGCAGCTTTCAGCTGTCAAGTCATTGTGCTGCATAGGAGTTTCGTTGTTCCAGTGTCAAGATCCCAGCATTTTTTTAGTGTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTATCCTGTCGTCCTGGACCCTGGAGGAACCATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCAATAACATACGGTTACTGAGTGCAGCCAGTCCGCCGCCTCTTTCATTTCAGCAGAAGAACACTTGGAGCACTCATTTATTTAGTATGAAATACCCACCTAATTACACTGTGCCTTCTAGATACAATGTGTTTAGGTGCCATTCGTCATTGATGACAGACCAACCACTGGATCCCCCTGGAATGAAGGCTGCTATAGTGGCATTGACAAGAAAAAGACAAGTCTGGAAAGCATATTTGCAGGGGCTGATTATCACACCAGCAATCTTCCCAGAATCTGATGCTTTTCCTGCACTTGGCTGTGAATTTTGTAAACTGATTGAAGGTTGGATAGTTGTTGGCAATGTAGCCGATCACACTCGTAGTGTTGCAAAGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTAGTTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACTAGAAGCCTACTCCATAGTGATAATAACTGGAAAAAAAGTCGGACATATAAAGTCATGACCTTCTATCTTCAACCATTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTGGATCGAGTAGTTTTACCTACAGGGTCTAGCCAAGTTGTGAAGCAACGGGTATTGAATTTTGTTAGGTCGTTGTCCACTGTGCTGGCCTTCGCTTATTGCTTATCAAGTATGATTCAACAAGCACAGAAGTTCTTCTCAGAGACTAGCGAATCCAGTGATGCAAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCAGTATGGGTTGCTGCTATCTCATTGTTCATGGAGCTGTTGGGCTTTTCTACCCAAAAATGGCTTACAGCTGGAGGTCTTGGCACTGTATTGTTGACATTAGCTGGCCGTGAGATCTTCACTAACTTCCTTTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTATTAATGAGTGGATCCAAACAAAGATTGAGGGCTACGAAGTTTCTGGCACTGTGGAGCATGTAGGATGGTGGTCACCAACGATTATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCACAAGTTTACAGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTATCTATCAGCCATTTGGACGTCAATAAAATCAATAATATCGTTGCAGACATGCGGAAAGTCTTAGCCAAGAACCCTCAAGTTGAACAACAGAAATTGCATAGAAGAGTATTTTTGGACAACGTGGATCCTGAAAATCAGGCACTTTTGATATTGATATCATGTTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTTAAGGAAGCTATAATTTTGGATCTTCTTAGAGTTATTAGACATCACCGGGCTCGACTTGCTACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACTTGGAAAGCGTTCCATTTGCTGATTCAATATTTGGTCGTGGTGGTGTGACTTTCAATCGTCGAATGCTGATGATTGAACCCCCCAACAAAGTTGATGGAGAAGATAAAAAGCAAAGCCATAGTAGGACATCACGGACAACTAGAGAACAAAATGGTAAGCCCATTGCACGGTCATCGGGCGACAGCAAGGCAGCTAAAGAGACCTCACCATCTGATAGAAAGACAGAAGGCAAGATTGGAGAAGTAAGAGACCCAGATACAAAAAAACATCCCAAAGTTTCAATGTCAACCTCCGAAGATAAATCTAACAATGAATTGAAACGTAAATCATCAGCAAGGCCTGATATGCCTTCTTCTGATGCCAAAACAACCAAATCAGATGCTGATAATTCATTTGAGGATTCCAGTACCAAGCAATCCGAAAATAGCTCGGGAATTAACAAGCAGAACTACAAGTCTAGCCATCCTGCTGTTTCCATTCCGGAAGATGTTAAGAAACCAGGAGGAACTTCAGCAGCTTCACAGCTAAGGATAGAAGGTGAACAGACACCAGTTTCAAGTCCATCAACAATGAAGCCTGGCGTAGAAGAGAATATAATCCTCGGTGTTGCTTTGGATGGCTCTAAGAGAACACTTCCCATTGAGGAGGACATGCCTTCTTCCCCTCAAACCACATCGGGAGCGAAAGATTTGGCAGCACGCTGGAATGGGAACGGGGCGAATGGGGCAACAAACTCCGATAAGGATACGAAACGTCAGACTCCATCTTCTAGTGAATAG 2424 42.45 MQLSAVKSLCCIGVSLFQCQDPSIFLVLAMVLVGSLQLSCRPGPWRNHLHEENLKFTSQSNNIRLLSAASPPPLSFQQKNTWSTHLFSMKYPPNYTVPSRYNVFRCHSSLMTDQPLDPPGMKAAIVALTRKRQVWKAYLQGLIITPAIFPESDAFPALGCEFCKLIEGWIVVGNVADHTRSVAKFCNVLGGCPPPVVKLVPAVCIIMFAVWGLGPFLRYTRSLLHSDNNWKKSRTYKVMTFYLQPLLLWTGATLICRALDRVVLPTGSSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAAISLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVINEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLSISHLDVNKINNIVADMRKVLAKNPQVEQQKLHRRVFLDNVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDLESVPFADSIFGRGGVTFNRRMLMIEPPNKVDGEDKKQSHSRTSRTTREQNGKPIARSSGDSKAAKETSPSDRKTEGKIGEVRDPDTKKHPKVSMSTSEDKSNNELKRKSSARPDMPSSDAKTTKSDADNSFEDSSTKQSENSSGINKQNYKSSHPAVSIPEDVKKPGGTSAASQLRIEGEQTPVSSPSTMKPGVEENIILGVALDGSKRTLPIEEDMPSSPQTTSGAKDLAARWNGNGANGATNSDKDTKRQTPSSSE 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12579025 12589574 + Maker00029760 Lcy6g1111 635555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1111 807 MobiDBLite consensus disorder prediction 759 807 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 614 682 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 683 704 - -
Lcy6g1111 807 Gene3D - 196 380 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 786 807 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 596 613 - -
Lcy6g1111 807 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 30 783 IPR045042 -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 575 743 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 765 779 - -
Lcy6g1111 807 Gene3D - 382 437 IPR023408 -
Lcy6g1111 807 SUPERFAMILY Sm-like ribonucleoproteins 366 436 IPR010920 -
Lcy6g1111 807 Pfam Mechanosensitive ion channel, beta-domain 366 436 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g1111 807 MobiDBLite consensus disorder prediction 723 741 - -
Lcy6g1111 807 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1478 Lcy-Chr13:33402353 Lcy6g1111 Lcy-Chr6:12579025 7.24E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1111 K22047 - csv:101217250 1009.21