Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1116 ATGCCCACTAACAAGGAGAAAGAGCCAGTTTCTGTGACCGGAGCCAATGGATTCATCGGATCCTGGGTCGTCCGTACGCTGTTGGAGTCCGGCTACACCACCATTCATGCCTCCATCTTCCCAGGCTCCGATCCTTCCCATTTGTTCAATCTCCAGGCCTCCGCTAATCCTAATGCCAACCTTAGAGTTTTCGAAGCCGACATAATGGACAGCGAGGCTGTGGCCAGGGCTGTGGAAGGCTGCAAGGGCGTATTCCACATTGCGTCGCCTTGCACGCTGGAGGATCCGATTGATCCACAGAGAGAATTGGTGGAGCCGGCGGTGCAAGGCACTATCAATGTTCTTGATGCCGCGAAGAAATTCGGGGTGAGGCGTGTTGTTCTTACTTCTTCCATTTCGGCTCTTGTTCCCAACCCTGGCTGGCCCGCCGATAAGCCCTTCGATGAATCCTCATGGACGGACCTTGAGTACTGCAAATCGCGCAAGGTTCTTGTTACCTGCCTTTTCGTTGTCATGTTTCCACTTTGCTGGGGAATGGTGGGAAAGATGGAAGGAAGGATTGTAGCGTTGGAGGAGAAACTATCGGAGTTGACCGTGAAACAGGTTGACATGGAAGTAAGCCTGGGAACACAGATCGCAGAGGTAGGAGAAGCACAAGCAAATGTTGATGCGAAATTGGACTTACAGTTCACGATGATTCGAGAAGAGATGAAGGCAATGTTTGTTCGGTTGGAGGGAATGAAATGGTATCCAGTGTCAAAAACATTGGCTGAGAAAGCAGCATGGGAGTTTGTGGAGAAGCATGGAATGGATGTAGTTTCCATCCTGCCTGCCACATGTCTTGGTCCTCTTCTGCAGCCTAACTTGAATGCAAGTTGTGCTGTATTGCAGCAGTTGCTCCAGGGATCCAAGGATAGTCAGGAATATCACTGGTTGGGTGCTGTGCATGTCAAAGATATTGCAAAAGCACAAGTTTTATTGTTTGAGTCGCCCACTGCTTCTGGTAGATATCTTTGCACCAACGGTATCTATCAATTTGCTGATTTTGCAGACAAAGTCTCGAAAATCTACCCTGAATTTCCAGTTCACAGATTTGTTGGAGAAACACAACCCGGCTTGGTTGCCTGCAAAGATGCAGCCAAGAGGTTAATTGATTTGGGACTTGTTTTCACTCCTCTTGAAGTTGCCATTCGAGATACGGTTGAGAGCCTTAGAAGCAAAGGCTTTTTGGAGCAGTGA 1239 48.75 MPTNKEKEPVSVTGANGFIGSWVVRTLLESGYTTIHASIFPGSDPSHLFNLQASANPNANLRVFEADIMDSEAVARAVEGCKGVFHIASPCTLEDPIDPQRELVEPAVQGTINVLDAAKKFGVRRVVLTSSISALVPNPGWPADKPFDESSWTDLEYCKSRKVLVTCLFVVMFPLCWGMVGKMEGRIVALEEKLSELTVKQVDMEVSLGTQIAEVGEAQANVDAKLDLQFTMIREEMKAMFVRLEGMKWYPVSKTLAEKAAWEFVEKHGMDVVSILPATCLGPLLQPNLNASCAVLQQLLQGSKDSQEYHWLGAVHVKDIAKAQVLLFESPTASGRYLCTNGIYQFADFADKVSKIYPEFPVHRFVGETQPGLVACKDAAKRLIDLGLVFTPLEVAIRDTVESLRSKGFLEQ 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12641990 12650090 - Maker00029803 Lcy6g1116 635560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1116 412 CDD FR_SDR_e 10 388 - -
Lcy6g1116 412 Gene3D - 219 412 - -
Lcy6g1116 412 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 161 IPR050425 GO:0016616(PANTHER)
Lcy6g1116 412 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 408 IPR036291 -
Lcy6g1116 412 Coils Coil 180 200 - -
Lcy6g1116 412 Pfam NAD dependent epimerase/dehydratase family 11 145 IPR001509 -
Lcy6g1116 412 Pfam NAD dependent epimerase/dehydratase family 249 333 IPR001509 -
Lcy6g1116 412 Gene3D - 2 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0060 Lcy-Chr11:589499 Lcy6g1116 Lcy-Chr6:12641990 5.44E-42 dispersed
Lcy11g0062 Lcy-Chr11:601583 Lcy6g1116 Lcy-Chr6:12641990 2.75E-44 dispersed
Lcy6g1116 Lcy-Chr6:12641990 Lcy8g1328 Lcy-Chr8:40043738 2.19E-61 dispersed
Lcy10g1178 Lcy-Chr10:34358170 Lcy6g1116 Lcy-Chr6:12641990 7.18E-36 transposed
Lcy10g0555 Lcy-Chr10:14937807 Lcy6g1116 Lcy-Chr6:12641990 1.99E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1116 - - - 0.0