Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1123 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACATGGGAAGTTAACTTACCTGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCTAGAGATGGAATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGTTTGCAACTGAACTTTGTGACTATTATAAATTCCTTAAAAAAGTGGTTAGCAAGCTAATAGTTGATTCATTTTCACCATATGACAATACTACAGATTGTGGACATTGCAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAGGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGCAATCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGATGACGAGCAGGGTGCAACATGTGGGGCTTGTGGGGACAACTATGGCAACGACGAATTCTGGATTTGTTGTGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCCGAGCATATCAAGCAATACAAATGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 882 45.58 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERFATELCDYYKFLKKVVSKLIVDSFSPYDNTTDCGHCRKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSSGKMQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12809765 12816577 + Maker00029725 Lcy6g1123 635567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1123 293 MobiDBLite consensus disorder prediction 221 238 - -
Lcy6g1123 293 Pfam Alfin 11 121 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy6g1123 293 SUPERFAMILY FYVE/PHD zinc finger 228 290 IPR011011 -
Lcy6g1123 293 PANTHER CPG BINDING PROTEIN 9 292 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Lcy6g1123 293 ProSitePatterns Zinc finger PHD-type signature. 240 286 IPR019786 -
Lcy6g1123 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 288 IPR013083 -
Lcy6g1123 293 ProSiteProfiles Zinc finger PHD-type profile. 237 289 IPR019787 -
Lcy6g1123 293 MobiDBLite consensus disorder prediction 178 209 - -
Lcy6g1123 293 SMART PHD_3 239 287 IPR001965 -
Lcy6g1123 293 MobiDBLite consensus disorder prediction 178 238 - -
Lcy6g1123 293 Pfam PHD-finger 240 286 IPR019787 -
Lcy6g1123 293 CDD PHD_AL_plant 240 289 IPR044104 -
Lcy6g1123 293 FunFam PHD finger alfin-like protein 232 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g2251 Lcy-Chr4:49057523 Lcy6g1123 Lcy-Chr6:12809765 9.64E-97 dispersed
Lcy5g0103 Lcy-Chr5:1075456 Lcy6g1123 Lcy-Chr6:12809765 1.97E-94 dispersed
Lcy6g1123 Lcy-Chr6:12809765 Lcy7g0988 Lcy-Chr7:10289649 2.67E-55 dispersed
Lcy6g1123 Lcy-Chr6:12809765 Lcy3g2232 Lcy-Chr3:49163114 7.64E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20302 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1123 K26274 - csv:101212601 455.292