Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1146 ATGGATGACGCTGGCGAGAACGGCCGCGAAATCGAGGGCTCCGAGAGGCTGCCCGAATGGCCGTTCTCTGAGGAAAGAGATTCCGTATCGCTCTCGCTAGGGGAGCCGCTTCTGCGTTCCAGTGCTGCCAGGATCAGTACCACCTCTCAGCTCGCCATTGTTGGTTCTAACGTTTGTCCAATTGAGAGCCTCGACTACGAGTACTTTCAGGCATTTACAGTATATGTTGGTGGCAATATTGTTTTGGCTGCTGCTGCTGCAGCCCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGACTCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGTTCTCAGCTGCAGCCCTCTTCAGTCTTCATTTCTTCTTCTTCTTTAGTTCTCAGCCCTCTCCCTCTCCACCGTCGTCACACCCACCGATGATTGTCAATCGCTTGCCCCACCGTGCTTCAGCATCAATGCCGCCGCCCCCTGTTGTCTCGCCATGCCACCACCGCTCCTTCCGATTTGAGTTGCAGCTTAACCAGTCTATTGTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGGGCATGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGAGACTTGATCACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGTGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCCGTTGTCTTGAGGGGTTTCATGGAATTTTGCCGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCAACATCAATACAGAAAACTCCACTTATGGCACTCCAGATCTTATTGCAATTGTTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTCGTTGATAAGGTCCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCGAAACTCATCCTTGTTGTTGGTGTTTCCATATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCTTGTCCAGCTGACTTAGAGGATGAATGCCCGACTGTTGGTCGCTCAGGAAACTACAAGAACTTCCAATGTCCACCTGGCCATTATAATGATCTTGCTTCCTTATTTTTCAATACCAATGATGATGCCATCCGGAACCTGTTCACATCTGCTACTGACAAGCAATTTCGGCTCTCCTCGCTTATTATCTTTTTTGCTGCTATCTATTGTCTTGGCATTATTACTTATGGCATTGCCGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCAGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTCACTAATAACCTTTTGATGCTCCCATTACTAATGCTGGTTCTTCTAATTTCGAAGTCGGTGGCAGATATTTTTAATAAGGGTGTCTATGATCAGATTGTGAAGATGAAGGGTCTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTTGCTGGTGGTGTGGCTTCTGGTCCCTTAATTATGTTCTCTGGGATTGAAAAGGTCGATAACATTATCCATGCTTTGAAAATGACAAACCACAACGGGTTTCCTGTAATTGATGAACCGCCTTTCTCAGATAGTTCAGAGCTTTGTGGGATTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGAAAAAAAATTTACGAAGCAAAAGGTGTCAATTAGATCAGAAATTTTGAGGACCTTCAAAGCACACGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACTTCAACGAGGAGGAGTTGGAAATGTTTGTTGATCTTCATCCCATTACAAACACGTCGCCCTACACAGTGGTAGAAACAATGTCTGTAGCTAAAGCGGCGATTCTCTTTCACGCACTCGGCTTGAGGCACTTGTTGGTGGTTCCAAAAACACCTGGGAGGCCACCAATTGTTGGAATTCTTACAAGGCACGACTTCATGCCGGAGCACATTCTGGGACTTTACCCGCACCTTAACCCCCACAAGTAG 2328 46.78 MDDAGENGREIEGSERLPEWPFSEERDSVSLSLGEPLLRSSAARISTTSQLAIVGSNVCPIESLDYEYFQAFTVYVGGNIVLAAAAAALCAYIAPAAAGSGIPEVKAYLNGIDSYSILAPSTLFVKFSAAALFSLHFFFFFSSQPSPSPPSSHPPMIVNRLPHRASASMPPPPVVSPCHHRSFRFELQLNQSIVGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGKCGLFGEGGLIMFNINTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKLILVVGVSILTTCVSFGLPWLSQCLPCPADLEDECPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRNLFTSATDKQFRLSSLIIFFAAIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLIMFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGIVLRSHLLVLLKEKKFTKQKVSIRSEILRTFKAHDFAKAGSGKGVKLEDLDFNEEELEMFVDLHPITNTSPYTVVETMSVAKAAILFHALGLRHLLVVPKTPGRPPIVGILTRHDFMPEHILGLYPHLNPHK 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13162333 13172226 - Maker00030157 Lcy6g1146 635590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1146 775 Gene3D - 584 761 IPR046342 -
Lcy6g1146 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 64 763 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Lcy6g1146 775 Pfam CBS domain 710 760 IPR000644 -
Lcy6g1146 775 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g1146 775 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g1146 775 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g1146 775 PRINTS Chloride channel signature 95 112 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy6g1146 775 SUPERFAMILY CBS-domain pair 586 760 IPR046342 -
Lcy6g1146 775 SUPERFAMILY Clc chloride channel 68 132 IPR014743 -
Lcy6g1146 775 Gene3D Clc chloride channel 185 583 - -
Lcy6g1146 775 ProSiteProfiles CBS domain profile. 709 772 IPR000644 -
Lcy6g1146 775 SUPERFAMILY Clc chloride channel 191 584 IPR014743 -
Lcy6g1146 775 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy6g1146 775 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy6g1146 775 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy6g1146 775 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lcy6g1146 775 MobiDBLite consensus disorder prediction 1 23 - -
Lcy6g1146 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 585 762 - -
Lcy6g1146 775 Gene3D Clc chloride channel 41 136 - -
Lcy6g1146 775 Pfam Voltage gated chloride channel 191 562 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2277 Lcy-Chr10:46461574 Lcy6g1146 Lcy-Chr6:13162333 4.64E-246 dispersed
Lcy4g2077 Lcy-Chr4:47312170 Lcy6g1146 Lcy-Chr6:13162333 1.09E-248 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1146 K05016 - csv:101209987 1037.71