Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1159 ATGCGACCCGATCCAGAAGCATCTTTGGGCGTTTACAAAACCCTAGTTTCCTCACTCGTTATAGTCTCTCTTCGTAACACACCTCCCGCAGGCTTCCCTCTTGCTCTCGGAAGAACGCTCGCCCTCACAGATCTGTTTTTTGAGCGAAACGTTTTTTCCGCGAAGCGATGGCTCTGGAGGGTTGCCAAGGTATTGCATTCTTGGAAGACTAACAAAAATGCTTACAAAGCTTTTATAGCTGCAGAATACAATGGTGTCAAGATTGACCTTGTACCAGATTTTACCATGGGCGTATCTAATAAGTCACCTGAATATCTTAAAATGAACCCTATTGGGAAGGTATACAAATATCCTACTGATGCTCTGGTTCCAGTGCTGCAAACACCCGATGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGCTTGAAGGACTGCGGTTTGTTTGGCTCTTCTTCAATTGAATATGGACATGTTGAACAGTGGATTGATTTCTCCACATCGGAAATTGATGCTCGTCTTTTAGATATGATGAAGCCTAGATTTGGATATGGTGTTCACCATCCTGCGGTAGAAGAGGCTGCAAACGCTGCCCTAAAACGAGCTTTGGCAGCTTTGAACTCTTACCTTGCTTCAAACACATTCCTTGTTGGACACTCTGTTACTCTGGCTGATATCATTTTGACATGCAATCTCTATTTGGGATTCACTTATATGTTGACTAAAAGCTTTACTTCTGAGTTCCCTCACGTTGAGAGGTACTTCTGGACATTGGTGAATCAACCAAATTTCCAAAAGGTAATTGGTGAGGTGAAGCAGACAGAATCTGTTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGAGGAAGAGGAGGCACCAAAGCCCAAGGCTAAAAATCCTCTTGACCTTCTCCCTCCCAGTAAGATGATTTTGGATGAGTGGAAACGTCTCTACTCGAACACGAAAACTAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGATATGTATGACCCTGAAGGGTACTCGCTCTGGTTCTGTGATTACAAGTACAACGAGGAGAATACGGTTTCGTTCGTGACTTTGAACAAAGTCAGTGGATTCCTCCAGAGAATGGATCTTGCACGCAAGTATGCCTTTGGAAAGATGCTGGTGATCGGATCAGAGGCACCCTTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATCCCACAATTTGTGCTCGACGAGTGCTACGACATGGAGCTGTACGAGTGGAAGAAGGTGGATATCTCTGATGAAGGCCAGAAGGAGAGAGTGAACCAAATGATTGAAGACCAGGAACCATTCGAGGGAGAAGCTCTTTTGGATGCCAAATGCTTCAAGTGA 1446 45.44 MRPDPEASLGVYKTLVSSLVIVSLRNTPPAGFPLALGRTLALTDLFFERNVFSAKRWLWRVAKVLHSWKTNKNAYKAFIAAEYNGVKIDLVPDFTMGVSNKSPEYLKMNPIGKVYKYPTDALVPVLQTPDGAIFESNAIARYVARLKDCGLFGSSSIEYGHVEQWIDFSTSEIDARLLDMMKPRFGYGVHHPAVEEAANAALKRALAALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYMLTKSFTSEFPHVERYFWTLVNQPNFQKVIGEVKQTESVPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAEEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNEENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVLDECYDMELYEWKKVDISDEGQKERVNQMIEDQEPFEGEALLDAKCFK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13418031 13421326 + Maker00030125 Lcy6g1159 635603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1159 481 MobiDBLite consensus disorder prediction 291 321 - -
Lcy6g1159 481 FunFam Elongation factor 1-gamma 1 321 481 - -
Lcy6g1159 481 SUPERFAMILY GST C-terminal domain-like 142 281 IPR036282 -
Lcy6g1159 481 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 321 481 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy6g1159 481 SMART EF1G_2 320 428 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy6g1159 481 Pfam Glutathione S-transferase, C-terminal domain 194 265 IPR004046 -
Lcy6g1159 481 MobiDBLite consensus disorder prediction 276 327 - -
Lcy6g1159 481 Pfam Glutathione S-transferase, N-terminal domain 67 145 IPR004045 -
Lcy6g1159 481 FunFam Elongation factor 1 gamma 148 284 - -
Lcy6g1159 481 CDD GST_C_EF1Bgamma_like 158 278 - -
Lcy6g1159 481 Gene3D Glutaredoxin 61 143 - -
Lcy6g1159 481 CDD GST_N_EF1Bgamma 65 146 - -
Lcy6g1159 481 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 155 283 IPR010987 -
Lcy6g1159 481 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 61 151 IPR004045 -
Lcy6g1159 481 SFLD Main (cytGST) 65 258 - -
Lcy6g1159 481 SUPERFAMILY eEF1-gamma domain 322 481 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy6g1159 481 SUPERFAMILY Thioredoxin-like 63 146 IPR036249 -
Lcy6g1159 481 Gene3D - 149 282 - -
Lcy6g1159 481 SFLD Glutathione Transferase (cytosolic) 65 258 IPR040079 -
Lcy6g1159 481 Pfam Elongation factor 1 gamma, conserved domain 320 428 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy6g1159 481 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 321 481 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Lcy6g1159 481 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 62 481 IPR044628 GO:0004364(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1159 Lcy-Chr6:13418031 Lcy7g1671 Lcy-Chr7:33203618 1.89E-223 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1159 K03233 - csv:101215571 649.047