Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1164 ATGAGCTCCAACAATGAGCTTCCTCAATCTAACTCCGCCGCCGCCGAGCAACCAAAGAAAATCAAACGCATCAGAAACAATTCCAATTCCAATAAGAGTAGTAGTGAGTCGAACAACAACAACAACAACAATCACCCAGTGTACCGAGGCGTCCGCATGAGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCACCCCGGAAATGGCCGCCCGTGCCCACGACGTCGCCGCCTTCAGCATCAAAGGCTCCTCCGCCACCCTCAATTTCCCCGACCTCCTCCACCTCCTCCCCCGCCCCGTCTCCCTCGCCCCTCGCGACGTCCAAGCCGCCGCCGCCAAGGCCGCCCACATGCACAACCTCGACCTCGACGACCACCACTCCCACGTCGACGACGACCTCACCGAGATCATCCAACTCCCCACCCTCGGCTTCCGATTGCCTTCTTCTCATTTGTTCCTCGTCAATCGTGGAGGATTTCATCAACACCATGCCTATATAAGGTTGCTAGCTATGGCCTTCCACATTGCCAATCAATTCAAAGCAAAAATCCTTACTTATCCATATTACCCAATCACCATGGCAATTACCAGATTTCTTTTCGTTTCTGTTGCTTTGATTGTTCTATTTTCAGGAATGGCTGACAGCTTTGAATTCGACGGGAAGGAGTTGACATCAAAAGAAAGTCTATGGAAGCTCTATGAGAGATGGAGTAAACACCATTCAATCTCTAGGGACCCAAAGCAGAAGCATACTCGTTTCAAAGTGTTTAACGAGAATGCGAGATATGTATTCAGAGTGAACCAAATGAACAAACCATACAAGTTGAGACTTAACAAATTTGCAGATATGTCCAATTATGAGTTTGTGAACTTGTTTGCTCGATCCAATATTACCCACTACAACAACTTATACGGCAAGAGAAAAGAAAGTGCGAGTCCATTCATGTACGAGGAGGCTACAGATCTTCCATCATCCATTGATTGGAGGAAAAAAGGAGCTGTCACTGAAATCAAGCAGCAAACCAGTTATTGTGGTAGCTGTTGGGCGTTTTCAGCTGTGGCTGCAGTTGAAGGAATCAACCAAATCAAAACGAAGCAGCTATTATCTCTATCGGAGCAGGAGCTTCTCGACTGCGATACAAGGAACTATGGTTGTGGCGGAGGATTTACGCCTTCTGCTTTTGAATTCATACAAGAAAATGGTGGAATCACCACTGAGAGCAACTATCCCTACTATGCCCAACAAGGATACTGCCTATCATCGATGAGGGATTCACCGAAGGTAACAATTGATGGATACGAATATGTTCCCTCAAATGACGAGAATGCTTTGATGAAAGCCGTGGCAAACCAGCCGATCTCAGTCGCCATAACATCGCAAGGAAATGATTTTCAATTCTACTGGCAAGGAGTGTTCGATGGATATTGTGGATCATCACTTAATCATGCAGTGGTGGCGATTGGCTACGGAACAACCGAAGACGGAACAGATTATTGGCTCGTAAAAAACTCGTGGGGAGTTCAGTGGGGAGAGGAAGGCTACATAAGGTTGAAACGAGGAATCGATGATCCAGAAGGAACTTGTAGAATAACTACAATACCCTCTTATCCCATCAAGTTTTAG 1665 46.97 MSSNNELPQSNSAAAEQPKKIKRIRNNSNSNKSSSESNNNNNNNHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAAFSIKGSSATLNFPDLLHLLPRPVSLAPRDVQAAAAKAAHMHNLDLDDHHSHVDDDLTEIIQLPTLGFRLPSSHLFLVNRGGFHQHHAYIRLLAMAFHIANQFKAKILTYPYYPITMAITRFLFVSVALIVLFSGMADSFEFDGKELTSKESLWKLYERWSKHHSISRDPKQKHTRFKVFNENARYVFRVNQMNKPYKLRLNKFADMSNYEFVNLFARSNITHYNNLYGKRKESASPFMYEEATDLPSSIDWRKKGAVTEIKQQTSYCGSCWAFSAVAAVEGINQIKTKQLLSLSEQELLDCDTRNYGCGGGFTPSAFEFIQENGGITTESNYPYYAQQGYCLSSMRDSPKVTIDGYEYVPSNDENALMKAVANQPISVAITSQGNDFQFYWQGVFDGYCGSSLNHAVVAIGYGTTEDGTDYWLVKNSWGVQWGEEGYIRLKRGIDDPEGTCRITTIPSYPIKF 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13456833 13459310 - Maker00029751 Lcy6g1164 635608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1164 554 SUPERFAMILY Cysteine proteinases 240 552 IPR038765 -
Lcy6g1164 554 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 512 531 IPR025661 -
Lcy6g1164 554 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 494 504 IPR025660 -
Lcy6g1164 554 MobiDBLite consensus disorder prediction 27 48 - -
Lcy6g1164 554 PRINTS Papain cysteine protease (C1) family signature 512 518 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Lcy6g1164 554 PRINTS Papain cysteine protease (C1) family signature 496 506 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Lcy6g1164 554 PRINTS Papain cysteine protease (C1) family signature 355 370 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Lcy6g1164 554 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1164 554 MobiDBLite consensus disorder prediction 1 16 - -
Lcy6g1164 554 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1164 554 FunFam Ethylene-responsive transcription factor 2 46 105 - -
Lcy6g1164 554 Gene3D Cysteine proteinases 222 553 - -
Lcy6g1164 554 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 238 545 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Lcy6g1164 554 SMART rav1_2 47 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1164 554 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677(InterPro)
Lcy6g1164 554 SMART Inhibitor_I29_2 247 302 IPR013201 -
Lcy6g1164 554 Pfam Cathepsin propeptide inhibitor domain (I29) 247 302 IPR013201 -
Lcy6g1164 554 Pfam AP2 domain 46 96 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1164 554 MobiDBLite consensus disorder prediction 1 49 - -
Lcy6g1164 554 FunFam Senescence-specific cysteine protease SAG39 227 553 - -
Lcy6g1164 554 Pfam Papain family cysteine protease 336 552 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Lcy6g1164 554 CDD AP2 48 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1164 554 SMART pept_c1 336 552 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Lcy6g1164 554 CDD Peptidase_C1A 337 551 IPR039417 -
Lcy6g1164 554 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1164 554 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0865 Lcy-Chr11:25790557 Lcy6g1164 Lcy-Chr6:13456833 2.85E-13 dispersed
Lcy13g1728 Lcy-Chr13:36247758 Lcy6g1164 Lcy-Chr6:13456833 1.00E-230 dispersed
Lcy13g1729 Lcy-Chr13:36261821 Lcy6g1164 Lcy-Chr6:13456833 1.26E-217 dispersed
Lcy13g1735 Lcy-Chr13:36304229 Lcy6g1164 Lcy-Chr6:13456833 2.72E-169 dispersed
Lcy13g1736 Lcy-Chr13:36311552 Lcy6g1164 Lcy-Chr6:13456833 4.89E-196 dispersed
Lcy13g1737 Lcy-Chr13:36319791 Lcy6g1164 Lcy-Chr6:13456833 3.87E-177 dispersed
Lcy2g1032 Lcy-Chr2:9988666 Lcy6g1164 Lcy-Chr6:13456833 9.19E-16 dispersed
Lcy3g2138 Lcy-Chr3:48321275 Lcy6g1164 Lcy-Chr6:13456833 6.35E-41 dispersed
Lcy5g0043 Lcy-Chr5:584555 Lcy6g1164 Lcy-Chr6:13456833 1.29E-98 dispersed
Lcy6g1164 Lcy-Chr6:13456833 Lcy7g0341 Lcy-Chr7:2864928 5.04E-101 dispersed
Lcy9g1599 Lcy-Chr9:41162444 Lcy6g1164 Lcy-Chr6:13456833 2.21E-19 dispersed
Lcy9g2084 Lcy-Chr9:45577194 Lcy6g1164 Lcy-Chr6:13456833 1.15E-22 dispersed
Lcy6g1164 Lcy-Chr6:13456833 Lcy9g2349 Lcy-Chr9:47804382 1.39E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20306 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1164 K16292 - csv:101205816 494.197