Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1176 ATGTTTTTTTTCCTTGTTTTTACATTCTTCTCTCTTCTAGGATCCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTGAATTCTCTGACTCTGCTGCACTAAGCACTTGGACTGCCTCAAACTTCAGCTCGGTTTGTTCGTGGATTGGGATTCGGTGCTCTGGCGGACGAGTTGTGTCAGTTGACTTGACAGATTTGGGCCTTGGTGGCTCTGTTTCCCCATTGATTTCAAGTCTTGACCAACTTTCTGAGTTGTCTGTTGCAGGAAATAACTTCACTGGTGGCATCGAAGTAGTGAATTTGAGTTTCCTTCGATTCCTTAACATCTCAAACAACCAGTTCAATGGGGCTCTGGACTGGAACTTCTCAAGTCTGCCGAACTTGGAGGTATTCGATGCCTATGACAACAACTTCACTGCTCTGCTCCCGACTGAGATTTTGAACTTAAAGAACCTCAAATACTTGGACCTTGGAGGTAACTTTTTCCAGGGAAAAATCCCTGAAAGCTATGGCAGTTTAGAAGGGTTGCAGTATCTTTCTCTTGGAGGAAATGATTTGGTTGGGAAAATCCCAGGTGAGTTGGGAAATCTCACAAATTTGAGAGAAATTTACTTGGGTCATTACAATGTTTTCGAAGGTGGGATTCCACCTGAGCTTGGGAAGTTGAGCAATTTGGTTATCATGGAGATTTCAAACTGCAGTTTGGACGGTCAAATTCCTCATGAACTGGGGAACTTGAAGTCCTTGACGACTCTATATTTGCATACGAATCTACTCTCAGGTTCGGTCCCGAAGCAGTTAGGCAATTTGACAAACTTGGTCATTCTTGATCTCTCCAACAATGCACTCACAGGTGAAATCCCATCTGAATTTGTTGATCTCAAACAGCTCCAGCTTCTCTACCTCTTCATGAACAAACTTCACGGATCTATTCCAGACTACATAGCAGATTTTCCAAACTTGGAGTCCTTGGCGCTGTGGACAAACAACTTCACCGGCACAATCCCAAAGAATCTTGGGCAAAATGGGAGGCTTCAGCTCCTTGATTTGTCGACGAACAAGCTCACGGGTACAATCCCTCAGGACTTGTGTTCATCGAACCAACTGAAAATACTGATTCTGATGAACAACTTCCTGTTTGGGCCAATCCCTGATGGCTTGGGGACATGTACCAGTCTTACAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAGTTAAATCTAGCAGAGTTTCAGGACAATTACCTTTCAGGTACACTTTCAGAGAATTGGGAGAGTTCATCAAAACCCATGAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCTGGAACTTTACCATTTTCACTTTCTAATTTCTCTTCTCTGCAAATCCTTCTCCTCAATAGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTCGATCTTAGCAGAAACTTACTTTCAGGTGAAGTTCCACTAGAAATTGGGAATTGCATCCATCTCACTTACCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCGCCTGAAATTTCCAATGCACATAATCTCAATTACCTCAACTTGTCCAGAAATCACCTAAATCAATCCTTACCGAAATCAATAGGGGCCATGAGGAGCCTCACCATTGCCGATTTCTCCTTCAATGATTTCTCTGGAAAGCTACCGGAATCAGGACAACTTGCCTTCTTCAATGCTTCATCCTTCGCCGGAAATCCTCAACTCTGCGGTTCCCTGCTCAATAATCCCTGCAACTTCGCAACAACAACAACAAAACCAGGAAAAACTCCGGCGTATTTCAAGCTAATCTTCGCCCTAGGCCTACTGGTTTGCTCTCTAGTGTTCGCCATAGCCGCAATAGTCAAAGCAAAATCATTCAAAAGAAACGGCTCAAGTTCATGGAAAATGACCTCATTCCAAAAGCTCGATTTCACCGTCTACGACGTCCTGGAGTGCGTGAAAGACGGTAACGTGATCGGAAGAGGTGGCGCCGGCATCGTCTACCACGGAAAAATGCCGAACGGTGTCGAAATCGCAGTGAAGAAACTCCTAGGGTTCGGCCCTAACAGTCACGACCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACATCGAAACATCGTCAGATTACTCGCATTTTGCTCCAACAAAGAAACAAATCTCCTCGTATACGAATACATGAGAAATGGAAGCTTAGGCGAAGCACTCCACGGTAAAAAAGCCTCGTTCCTTGGCTGGAATTTGAGATACAAAATCGCCATTGAAGCCGCCAAAGGTCTCTGCTACCTCCACCATGATTGCTCTCCACTAATCGTCCACCGAGACGTGAAATCAAACAATATCCTCTTGAATTCCAACTTCGAAGCTCACGTCGCCGATTTCGGACTGGCGAAGTTCATGTTCGACGGCGGCGCGTCGGAGTGCATGTCGGTTGTCGCCGGATCTTACGGCTACATCGCTCCAGAATATGCATACACACTAAGAGTCGATGAGAAAAGCGATGTATATAGTTTTGGAGTTGTGCTATTAGAGCTTTTGACGGGACGTCGTCCAGTTGGAGATTTCGGGGACGGAATGGTTGACATAGCACAATGGTGTAAAAGAGCCATAACAAATGGCGAGAGCGAAAACGACATTATTTGCATAGTTGACAAAAGGGTAGAGATGGTACCTAAAGAAGAAGCAAAACACTTATTCTTCATAGCAATGTCGTGTGTGCAAGAGAACAGCGTGGAAAGACCAACAATGAGAGAAGTGGTTCAAATGTTGGCTGAGTTTCCTCACCAATCTCCCAACTATTACCAATCGTCCTCTTCTTCTTCTCCCTGTCAAAATTTGAAGAAGGGTGAAAAGGAGAAAGAAGATCATCAAAATTTGAAGAAGGGTGAAAAGGAGAAAGAAGATCATTCAAAGTCCAAACCAGAGCTTATGGTTTAA 3042 44.21 MFFFLVFTFFSLLGSSSSHSLVSDFHVLLALKQGFEFSDSAALSTWTASNFSSVCSWIGIRCSGGRVVSVDLTDLGLGGSVSPLISSLDQLSELSVAGNNFTGGIEVVNLSFLRFLNISNNQFNGALDWNFSSLPNLEVFDAYDNNFTALLPTEILNLKNLKYLDLGGNFFQGKIPESYGSLEGLQYLSLGGNDLVGKIPGELGNLTNLREIYLGHYNVFEGGIPPELGKLSNLVIMEISNCSLDGQIPHELGNLKSLTTLYLHTNLLSGSVPKQLGNLTNLVILDLSNNALTGEIPSEFVDLKQLQLLYLFMNKLHGSIPDYIADFPNLESLALWTNNFTGTIPKNLGQNGRLQLLDLSTNKLTGTIPQDLCSSNQLKILILMNNFLFGPIPDGLGTCTSLTKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSKPMKLGQLNLSNNLLSGTLPFSLSNFSSLQILLLNSNQFSGTIPPSIGELNQLLKLDLSRNLLSGEVPLEIGNCIHLTYLDLSKNNLSGPIPPEISNAHNLNYLNLSRNHLNQSLPKSIGAMRSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTTTKPGKTPAYFKLIFALGLLVCSLVFAIAAIVKAKSFKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFDGGASECMSVVAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGDGMVDIAQWCKRAITNGESENDIICIVDKRVEMVPKEEAKHLFFIAMSCVQENSVERPTMREVVQMLAEFPHQSPNYYQSSSSSSPCQNLKKGEKEKEDHQNLKKGEKEKEDHSKSKPELMV 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13688637 13695398 + Maker00030238 Lcy6g1176 635620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1176 1013 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 960 IPR050647 -
Lcy6g1176 1013 SUPERFAMILY L domain-like 352 609 - -
Lcy6g1176 1013 SMART LRR_typ_2 182 206 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 255 278 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 134 157 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 279 303 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 474 498 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 327 351 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 547 570 IPR003591 -
Lcy6g1176 1013 SMART LRR_typ_2 352 375 IPR003591 -
Lcy6g1176 1013 Gene3D Ribonuclease Inhibitor 129 219 IPR032675 -
Lcy6g1176 1013 Gene3D Transferase(Phosphotransferase) domain 1 762 982 - -
Lcy6g1176 1013 Pfam Leucine rich repeat 257 316 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 MobiDBLite consensus disorder prediction 966 1013 - -
Lcy6g1176 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1176 1013 SUPERFAMILY RNI-like 69 389 - -
Lcy6g1176 1013 Pfam Leucine Rich Repeat 453 474 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 353 374 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 233 255 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Lcy6g1176 1013 Gene3D Ribonuclease Inhibitor 23 128 IPR032675 -
Lcy6g1176 1013 ProSiteProfiles Protein kinase domain profile. 685 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1176 1013 SMART serkin_6 685 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1176 1013 Gene3D Phosphorylase Kinase; domain 1 650 761 - -
Lcy6g1176 1013 SUPERFAMILY Protein kinase-like (PK-like) 669 958 IPR011009 -
Lcy6g1176 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 975 - -
Lcy6g1176 1013 Coils Coil 981 1001 - -
Lcy6g1176 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 620 - -
Lcy6g1176 1013 MobiDBLite consensus disorder prediction 966 980 - -
Lcy6g1176 1013 Gene3D Ribonuclease Inhibitor 220 323 IPR032675 -
Lcy6g1176 1013 Gene3D Ribonuclease Inhibitor 325 619 IPR032675 -
Lcy6g1176 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 219 324 - -
Lcy6g1176 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 761 - -
Lcy6g1176 1013 Pfam Protein tyrosine and serine/threonine kinase 688 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1176 1013 MobiDBLite consensus disorder prediction 981 1013 - -
Lcy6g1176 1013 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 131 218 - -
Lcy6g1176 1013 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1085 Lcy-Chr6:12136941 Lcy6g1176 Lcy-Chr6:13688637 7.19E-155 dispersed
Lcy6g1176 Lcy-Chr6:13688637 Lcy9g2275 Lcy-Chr9:47182689 1.28E-134 dispersed
Lcy6g1176 Lcy-Chr6:13688637 Lcy1g0870 Lcy-Chr1:7482960 8.32E-159 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66036 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1176 - - - 0.0