Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1198 ATGGCACCCATCGTTTATGGGAATGGGTTTGTTTGGGATTTGCTTTTGTTGATTTTCATGGTGCTTAGTCTTGGTGGGTTCTTCGTCCATGGGGATAATGGTGGTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACCAGTCTTGGAGGAGCATGTGGGTACGACAATACATTCCATGCTGGATTTGGAATAAACACGGCGGCGGTGAGCGGCGCGCTTTTCAGAGGCGGAGAGGCCTGCGGCGCTTGCTTTCTAGTAATCTGCAACTACAACGTGGACCCGAAGTGGTGCCTCCGCCGCCGCGGCGTCACCGTGACGGCCACAAACTTCTGCCCCTCCAATAACAACGGCGGGTGGTGCGACCCCCCTCGCTCCCATTTCGACATGTCGTCTCCGGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGCATCGTCCCTGTCCTTTATAAGAGGGTGAGTTGTAGAAGGAAGGGAGGGGTTCGATTCACGTTGAGAGGACAATCAAACTTCAACATGGTGATGATATCGAATGTTGGTGGGAGTGGTGACATGAAGGCTGCATGGGTAAAGGGGTCGAGAACGAGGACGTGGATGCCCATGCACCGAAATTGGGGGGCAAACTGGCAAGCCAACGTCGACCTTCGAAACCAAAGACTCTCCTTTAAGCTCACTCTAGTCGATGCAACAACATTGGAGTTTGTCAATGTGGTTCCTTCCTCTTGGAGGTTTGGCCAGACATTTTCTTCCATCATTCAGTTTTCTTAG 783 51.34 MAPIVYGNGFVWDLLLLIFMVLSLGGFFVHGDNGGWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNVDPKWCLRRRGVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDMKAAWVKGSRTRTWMPMHRNWGANWQANVDLRNQRLSFKLTLVDATTLEFVNVVPSSWRFGQTFSSIIQFS 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14070755 14072609 + Maker00030282 Lcy6g1198 635642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1198 260 PANTHER EXPANSIN-A15 24 254 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 Gene3D - 28 161 IPR036908 -
Lcy6g1198 260 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
Lcy6g1198 260 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Lcy6g1198 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Lcy6g1198 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Lcy6g1198 260 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576(InterPro)
Lcy6g1198 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Lcy6g1198 260 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Lcy6g1198 260 Pfam Lytic transglycolase 71 155 IPR009009 -
Lcy6g1198 260 CDD DPBB_EXPA_N 35 160 - -
Lcy6g1198 260 SUPERFAMILY Barwin-like endoglucanases 17 183 IPR036908 -
Lcy6g1198 260 Gene3D - 165 260 IPR036749 -
Lcy6g1198 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 165 IPR007112 -
Lcy6g1198 260 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Lcy6g1198 260 PRINTS Expansin signature 66 80 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 95 106 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Lcy6g1198 260 SMART dpbb_1 71 155 IPR007112 -
Lcy6g1198 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1198 Lcy-Chr6:14070755 Lcy7g1071 Lcy-Chr7:11465885 9.33E-90 dispersed
Lcy6g1198 Lcy-Chr6:14070755 Lcy2g0567 Lcy-Chr2:4877217 2.93E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1198 - - - 0.0