Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1248 ATGGGAAGGCAGAGGAGGAAGAATGTGAGGATGTGGGTGACGGCGACCATGGGCAGAGGTGGAAGAGAGGAGGATTTGGGTGCAGCATTGCAGTGGGCTGCAGCGCCCCTTCATTTCTCTCTGCTCCTCACAGCTTTCCCCCAACTCAGAAGAGAGCTCCACTATCATGTCAATGGCCGCCACCTCCACCACCCTCCTCCGCCCGACCCCCTTTCTCGGCCAGACCAGAGGCGCCTCTTCCCAGAACCCCCTCAGAGATGTCGTCGCCATGGGAACTGGAAAATACACCATGGTCTCTCTCTCTTTCTTTCTCTGTTGCCAGCTTTTGTTTTTTCGCTCTATGTTGAAGTGAAGACTGATGGTGTTTTTAATTGTGAACAGGGAAATGATCTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGCCCCTTTTCAGCTCAGACTCCCTCCTACTTGAACGGCGAGTTCCCCGGCGATTATGGATGGGACACTGCCGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTGATCCACGGGAGGTGGGCCATGTTGGGAGCCTTGGGGTGCATAACACCAGAGGTGCTGGAGAAATGGTTGAGAGTGGACTTCAAGGAGCCGGTCTGGTTCAAGGCCGGCGCCCAAATCTTCTCAGAAGGAGGGCTCGACTACCTGGGCAACCCGAACCTGGTCCACGCCCAGAGCATCCTGGCCGTGTTGGGCTTCCAAGTGGTCCTAATGGGCCTGGTCGAAGGCTTCCGCATCAACGGCCTGGACGGCGTCGGCGAGGGCAACGACCTGTACCCGGGCGGCCAGTACTTCGACCCACTCGGACTGGCCGACGACCCAGTCACCTTCGCCGAGCTCAAGGTCAAGGAGATCAAGAACGGCCGCCTCGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACCGGGAAAGGCCCGCTCGAGAACCTACTCGACCATCTCGATAACCCTGTCGCCAACAATGCTTGGGTTTATGCCACCAAGTTTGCTCCCGGCTCATAA 1053 57.55 MGRQRRKNVRMWVTATMGRGGREEDLGAALQWAAAPLHFSLLLTAFPQLRRELHYHVNGRHLHHPPPPDPLSRPDQRRLFPEPPQRCRRHGNWKIHHGLSLFLSLLPAFVFSLYVEVKTDGVFNCEQGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15037695 15040408 - Maker00030283 Lcy6g1248 635692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1248 350 Gene3D Chlorophyll a/b binding protein domain 139 343 - -
Lcy6g1248 350 MobiDBLite consensus disorder prediction 62 85 - -
Lcy6g1248 350 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 128 349 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Lcy6g1248 350 SUPERFAMILY Chlorophyll a-b binding protein 131 347 - -
Lcy6g1248 350 Pfam Chlorophyll A-B binding protein 149 317 IPR022796 -
Lcy6g1248 350 FunFam Chlorophyll a-b binding protein, chloroplastic 139 343 - -
Lcy6g1248 350 MobiDBLite consensus disorder prediction 60 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1248 Lcy-Chr6:15037695 Lcy8g1625 Lcy-Chr8:42832368 7.96E-110 dispersed
Lcy1g1546 Lcy-Chr1:15313044 Lcy6g1248 Lcy-Chr6:15037695 2.42E-31 transposed
Lcy5g0115 Lcy-Chr5:1175515 Lcy6g1248 Lcy-Chr6:15037695 3.81E-29 transposed
Lcy9g2374 Lcy-Chr9:48038279 Lcy6g1248 Lcy-Chr6:15037695 6.22E-41 transposed
Lcy2g1692 Lcy-Chr2:25394891 Lcy6g1248 Lcy-Chr6:15037695 2.31E-29 wgd
Lcy6g1248 Lcy-Chr6:15037695 Lcy9g0400 Lcy-Chr9:11290025 4.51E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1248 K08914 - gmx:100790960 464.151