Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1250 ATGGCCACCACCCCTTCCCATTCCCACCACCACACCGCCACCACCTCCGACGAAGAAGAAGAAAAAGATTTAGAAGACGACCAATCCAACGGCGCTGCCTTCTGCCGGAACCTTTACGGAGTCGGGTCGGTTCTCGACCCGAGAACCAAATGGGTCCGCGAATGGAACCGGGTCTTCCTCCTGGTCTGCGCGGGCGGGCTGTTCGTGGACCCTCTCTTCCTCTACACGCTCTCGATAAGCGAGTCCTGGATGTGCGTGTTCGTGGACGGCTGGCTCGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCCTTGCACCTCTGGAACATCTGGCTCCAGCTCAAGACCGCCACGAGATCTTCCTTCGCCGCCGCCGACAACACACGCCTCACTGATACAACCCCACGCGCCGTCGCTCTCCGCTACTTCAAGTCCAAGAAAGGCTTCTTCTTCGATCTCTTTGTCATTCTTCCTCTTCCTCAGGTTCTATTATGGGTTGTAATTCCTTGGATAATGAAAGAAGGATCAGTGACACTGGTGATGACAGTGTTGTTGATAGTATTTCTGTTTCAATATTTGCCCAAACTCTACCACTCGGTTTGCCTCTTGCGGCGCCTCCAAAACCTCTCTGGCTACATCTTCGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCTCATGCTGCAGGAGCATGCTGGTACCTGCTGGGGATACAAAGGGCAGCCAAGTGCCTGAAAGAGCAATGCAGGGCAACGAGCAGCTGTGGACTGAGATCGTTGTCCTGCAAAGACCCAATATTCTATGGGGCAACCGACATGAACATGGGCAGAGACAGAGCAAGATTTGATTGGGCGAACAACAGGCTACCGAAATTCATGTGTTTGGACACTGCAGACAACTTTGATTATGGAGCTTACAAATGGACTGTTCAGCTTGTTGTCAATCAGAGTCGCTTGGAGAAGATCCTTTTCCCCATCTTTTGGGGCCTCATGACTCTTAGTACATTTGGCAACTTGGAGAGCACCACGGAATGGCTCGAAGTAGTCTTCAATATCATTGTTCTCACCAGTGGACTTCTCTTGGTCACCATGTTGATTGGGAATATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAACAAGGAATGCAGCTGAAGATGAGGAACCTCGAGTGGTGGATGAGGAAGCGACGCCTGCCACAAGGCTTCCGACAGCGCGTTCGCAACTACGAGCGGCAGCGGTGGGCAGCGATGCGCGGTGTCGACGAGTGCGAGATGATCAGAAACCTTCCGGAAGGGCTCCGGCGAGACATCAAGTACCACCTTTGCTTGGATCTGGTCAGACAGGTTCCTTTGTTTCAACATATGGATGAACTTGTTCTTGAGAACATATGCGACCGTGTCAAGTCCCTCATCTTCACCAAAGGAGAAACTATAACGAGAGAAGGAGACCCAGTGCAGAGAATGCTATTCGTGGTGCGAGGCCACCTCCAAAGCAGCCAAGTCCTACGCGACGGCGTCAAGAGCTGCTGCATGTTGGGCCCAGGCAACTTCAGCGGCGACGAGCTTCTGTCCTGGTGCCTCCGCCGCCCCTTCATAGAGCGCCTGCCGCCCTCCTCCTGCACTCTCGTCACTCTCGAGACCACCGAGGCCTTCGGCTTGGAGGCCGACGACGTCAAGTACGTAACCCAGCACTTCCGCTACACATTCGTCAACGACAAGGTCAAGCGCAGCGCCCGTTACTACTCCCCCGGCTGGCGCACTTGGGCCGCCGTCGCCATCCAGCTCGCCTGGCGCCGATACCGCCACCGTCTCACTCTCACGTCCTTGTCGTTTATTCGCCCTCGGCGGCCGCTCTCGCGGTGCTCTTCGCTGGGCGAGGATCGCCTCCGCCTCTATACGGCGTTGCTCACTTCTCCAAAGCCCAATCAGGATCACTTTGATTTTTGA 1971 54.74 MATTPSHSHHHTATTSDEEEEKDLEDDQSNGAAFCRNLYGVGSVLDPRTKWVREWNRVFLLVCAGGLFVDPLFLYTLSISESWMCVFVDGWLAITVTVLRCMADALHLWNIWLQLKTATRSSFAAADNTRLTDTTPRAVALRYFKSKKGFFFDLFVILPLPQVLLWVVIPWIMKEGSVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGIQRAAKCLKEQCRATSSCGLRSLSCKDPIFYGATDMNMGRDRARFDWANNRLPKFMCLDTADNFDYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEADDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15082756 15090745 + Maker00030258 Lcy6g1250 635694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1250 656 MobiDBLite consensus disorder prediction 1 26 - -
Lcy6g1250 656 Pfam Cyclic nucleotide-binding domain 480 569 IPR000595 -
Lcy6g1250 656 SUPERFAMILY cAMP-binding domain-like 385 573 IPR018490 -
Lcy6g1250 656 CDD CAP_ED 459 565 IPR000595 -
Lcy6g1250 656 Gene3D Helix hairpin bin 384 450 - -
Lcy6g1250 656 SMART cnmp_10 459 588 IPR000595 -
Lcy6g1250 656 ProSiteProfiles cAMP/cGMP binding motif profile. 459 538 IPR000595 -
Lcy6g1250 656 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 41 613 - -
Lcy6g1250 656 Gene3D Jelly Rolls 457 575 IPR014710 -
Lcy6g1250 656 SUPERFAMILY Voltage-gated potassium channels 47 380 - -
Lcy6g1250 656 FunFam cyclic nucleotide-gated ion channel 4 457 575 - -
Lcy6g1250 656 FunFam Cyclic nucleotide-gated ion channel 1 386 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g0312 Lcy-Chr6:2939425 Lcy6g1250 Lcy-Chr6:15082756 3.17E-165 dispersed
Lcy6g1250 Lcy-Chr6:15082756 Lcy9g1763 Lcy-Chr9:42827391 2.07E-116 dispersed
Lcy6g1250 Lcy-Chr6:15082756 Lcy8g1911 Lcy-Chr8:45376747 3.91E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1250 K05391 - csv:101207531 1195.26