Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1252 ATGGACTCTTTCTCTCAAACACTAATCGCTTTTAACTTGGCCTTTTGTCTCTTCAGGTCTGTAGCTGCCATTGATTCTTTAACTGCTCGAAACCCATTTCTCAGCGATGGGCTTAACGGCAGCAGTTTGGTCTCCGGAAATGGAAACTTCGAATTGGGTTTCTTCAGTCCTGGTCCTGGCCTTCCCAGTAAGCGTTACTTGGGAATCTGGTTCAAGAATCGACGCGGTCCGACCTCTGTTTGGGTTGCAAACAGGGAAAACCCCATTAACGACTTATCAGGTGTATTGGTAATGAACATTGCTACAGGAGACCTTACACTTTATAGCCACAATAACACCGCGATTGTTTGGTCTGCCAAGTTACTGAGAAAAGTCCCCAATGGGGTTTTGCAGCTATTGAACACTGGAAATCTTGTGCTGCGAGATGGGGAAGATACAAATCCCCAGAAATATTCTTGGCAAAGCTTTGATTATCCAACTGACACTCTCTTGCCTGGAATGAAGCTAGGCTGGGACTTGAGAAATAACATCGATAGAAGATTGTCTGCTTGGAAGAATTCCAATGATCCATCTCCTGGAAGCCTCAGTTGGAGGGTGGAGCTACATGAATATCCTGAGTCTGTTATGTGGAACGGTTCCAAGGAATACTTCAGATTGGGCCCATGGAATGGTGTGGGAATCACTGGTTGGCCAATAGACTTCGTCCCAATGTTGAACGTCATCTTTGTGTCCAATGAGGATGAGGTTTACTACCAATACTCTGAAGTTAATGCGTATTATACAGCGATGCTGGTGTTGAACCAATCCACTTATGTGCGCTCACTGTACTTGTGGTCTGTAACTGAGGGACAATGGACGGTCGACAATTCACTACCAAATGACTTCTGTGACACTTATGCACTCTGTGGCCCTTATGGATATTGTGATCTTAGAGACAGTCCATCTTGTAAGTGTCTAGAAGGGTTTAAGCCAAGATTACCTGAGAATTGGAAGGCAGGGGAATTTGCAGATGGTTGTGAACGAAATAAACCGATGAATTGTAGCGATGAAATTGGGTTTGCACATTTCAACCAGTTGAAATTGCCAGATACAAAGCATACTTGGGTGAACGAAAGCATGAATCTTGAAGAATGCAAGCAAAAATGCTTGAGGAACTGTTCTTGTATGGCTTATTCAAATACAAATATCACTGGGAGTGGCAGTGGTTGTGCCTTATGGATGGGTGATATCATTGACTTGAAAATAATTCCGGGTGCCGGACAGGATTTATATGTCAGAATGCTAGCATCAGAATTAGTCAAGCATAGAGAGGCACACGAAAGGTTGAATCCTAAGGTGAAGATTGCTATAGTTGTGATTGCCACTGGTTTAGTTTTGGCTATCCTCTACATATGCTTATACATTTTCAAAAAGAGGTCAACCTTCAAAGATGGACACCATGAGAAATTAGAAGCTGAAGACTTGGAGCTTCCTTTGTTTGAACTATCCTTGATAAATAGTGCCACCAATAACTTCTCACTTGATAATAAAATTGGAGAAGGGGGCTTTGGACCAGTATATAAGGGTAAGCTCACAAATGGACAAGATATTGCTGTGAAGAGACTTTCACAGTGTTCTGGACAGGGAATAAATGAGTTCAAGAATGAAGTGATCCTATCTGCAAAGCTTCAACATCGAAATCTCGTAAAGCTTCTTGGTTGTTGCATTCAAGGAGACGAGAAAATGCTAGTTTATGAGTACATGCCGAACAAAAGCTTGGACTTCTTTATATTTGATGAAGCACGACGTCGGCTATTAGATTGGTCGCAACGATATCACATTATCTGTGGAATTGCAAGAGGGCTCGTGTATCTTCATCAAGATTCCAGATTAAGGATTATACATAGAGATCTAAAAGCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATTTCTGATTTTGGTCTTGCGAAAACTTGTGGTGGGGATCAAACTGAAGGAGAGACAACAAAAGTGGTTGGAACCTATGGATACATGGCCCCAGAATATGCTTTTGATGGACAATTCTCGATAAAATCAGACACATTTAGTTACGGGATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCCGAGGATTTCGTCATTCAAATGACCAAAATCTCATTGGATATGCATGGCAATTGTGGAAAGATGGAAATCCAGGAGAATTGATTGACGATGCCATTCAAGAAACATGCAATTTCTCTGAGGTACTAAGATGTATCAATATCAGCTTGTTGTGCGTTCAACAACATCCCAACGATCGACCCACGATGTCATTGGTGGTTATGATGTTAGGCTGCAAAATTCCTTTGTTGCAACCCAAACAACCAGGATTTTTTGTAGAGAGTGAAGGCATTACAATGGATAACTGCTCAAGTAAAGATAAATCAGCTTCAACCAGTGGGTTGATGTTTACATTCTCAGATGCTCAGTAA 2466 41.36 MDSFSQTLIAFNLAFCLFRSVAAIDSLTARNPFLSDGLNGSSLVSGNGNFELGFFSPGPGLPSKRYLGIWFKNRRGPTSVWVANRENPINDLSGVLVMNIATGDLTLYSHNNTAIVWSAKLLRKVPNGVLQLLNTGNLVLRDGEDTNPQKYSWQSFDYPTDTLLPGMKLGWDLRNNIDRRLSAWKNSNDPSPGSLSWRVELHEYPESVMWNGSKEYFRLGPWNGVGITGWPIDFVPMLNVIFVSNEDEVYYQYSEVNAYYTAMLVLNQSTYVRSLYLWSVTEGQWTVDNSLPNDFCDTYALCGPYGYCDLRDSPSCKCLEGFKPRLPENWKAGEFADGCERNKPMNCSDEIGFAHFNQLKLPDTKHTWVNESMNLEECKQKCLRNCSCMAYSNTNITGSGSGCALWMGDIIDLKIIPGAGQDLYVRMLASELVKHREAHERLNPKVKIAIVVIATGLVLAILYICLYIFKKRSTFKDGHHEKLEAEDLELPLFELSLINSATNNFSLDNKIGEGGFGPVYKGKLTNGQDIAVKRLSQCSGQGINEFKNEVILSAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDEARRRLLDWSQRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETTKVVGTYGYMAPEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHSNDQNLIGYAWQLWKDGNPGELIDDAIQETCNFSEVLRCINISLLCVQQHPNDRPTMSLVVMMLGCKIPLLQPKQPGFFVESEGITMDNCSSKDKSASTSGLMFTFSDAQ 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15124161 15127875 - Maker00030257 Lcy6g1252 635696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1252 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 783 - -
Lcy6g1252 821 CDD STKc_IRAK 511 775 - -
Lcy6g1252 821 Pfam PAN-like domain 347 413 IPR003609 -
Lcy6g1252 821 SMART serkin_6 505 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1252 821 CDD PAN_AP_plant 344 426 - -
Lcy6g1252 821 Gene3D Transferase(Phosphotransferase) domain 1 581 780 - -
Lcy6g1252 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 31 789 - -
Lcy6g1252 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1252 821 Gene3D Phosphorylase Kinase; domain 1 468 580 - -
Lcy6g1252 821 ProSiteProfiles Protein kinase domain profile. 505 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1252 821 CDD B_lectin 38 159 IPR001480 -
Lcy6g1252 821 SUPERFAMILY Protein kinase-like (PK-like) 490 775 IPR011009 -
Lcy6g1252 821 PIRSF SRK 1 820 IPR024171 GO:0004674(InterPro)
Lcy6g1252 821 SMART ntp_6 348 427 IPR003609 -
Lcy6g1252 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 190 IPR036426 -
Lcy6g1252 821 Pfam D-mannose binding lectin 78 185 IPR001480 -
Lcy6g1252 821 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Lcy6g1252 821 SMART blect_4 34 159 IPR001480 -
Lcy6g1252 821 Gene3D - 29 156 IPR036426 -
Lcy6g1252 821 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Lcy6g1252 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 470 580 - -
Lcy6g1252 821 Pfam Protein tyrosine and serine/threonine kinase 506 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1252 821 Gene3D Hepatocyte Growth Factor 344 421 - -
Lcy6g1252 821 Pfam S-locus glycoprotein domain 217 325 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1252 Lcy-Chr6:15124161 Lcy6g1266 Lcy-Chr6:15602742 0 dispersed
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1252 Lcy-Chr6:15124161 1.79E-84 wgd
Lcy5g1949 Lcy-Chr5:42303469 Lcy6g1252 Lcy-Chr6:15124161 4.17E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66037 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1252 - - - 0.0