Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1266 ATGTACGCGCGCGATTCAGTCCACGTCCGAATTGTTCACTCCCAGATCTTGACGTCCCTCTCGTTGGACTGTTCCAGATCTCGCCACGCACGCCCAGATCTCGTCATGAGTTCAAATGCACGCCCACATCGAAGACCCAGAGTTGGTATATGTCAAAGCATGCCCACTTTGACTTGCCCATATACTTACAAAAGGATTGCGCAGGATTTGAATCGCAACATGTCTGTATCTGCCATTGATTCCTTAACTTCTCAAAATCCATTTCTCAGCGACGGGCTTACTCTGCTCTCCAGAAATGGAGACTTCGAATTGGGTTTCTTCAGTCCTGGCCTTCCCAGTAACCGTTACTTGGGAATCTGGTTCAAGAATCGACGAGGCCCAACCTCTGTTTGGGTTGCAAACAGAGAAAACCCCATTAACGACTCGTCTGGCGTGTTGGTGATGAGCGTTAGTACAGGAAATCTTACACTCTATAGCCACAATAACACTGCCGTTGTTTGGTCTGCCAAGTTACTGAGAAAAGTCCCCAATGGGGTGTTGCAGCTATTGGACACTGGAAATCTTGTGCTGAGAGATGGGGAAGATGCAAATCCCCAAAACTATTCCTGGCAAAGCTTTGATTACCCAACCGACACTCTCTTGCCAGGAATGAAGCTAGGTTGGGACTTGAGAAATAAAATTGATAGAAGATTGTCTGCTTGGAAAAATCTCAATGACCCATCTCCTGGAAGCCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGACTGTCATGTGGAATGGTTCCAAAGAATTCTTCAGGCATGGCCCATGGAATGGTGTGAGAATCTCCAGTTGGCCTATTGGCTTAGCGCCAAACTTGGTACTCCACTTTGTTTCCAATGAGGATGAGGTTTACTACCAATACACTGTGATAGATGAGTCTTATACAGTGATGCTGGTGTTGAACCAATCCATCAACGTGCGCACGGTGTACTTATGGTCTGTAAGCGAGAGGAAATGGACGGTTTACAACTCATTACCAAGAGATTTCTGTGACAATTATGCTCTGTGTGGCCCCTATGGATATTGTGATTTTAGGGTCGTTCCATCTTGTAACTGTCTACAAGGGTTTAAGCCAAGATCACCTGAGAATTGGAAGGGAGGGGAATTTGGAGATGGTTGTGAACGAAAGAAACCGTTGAATTGTGGCGATGAAGTTGGGTTTGCACAATTCAACCAAATGAAACTGCCTGACACAACGCATACTTGGGTAAACAATAGCATGAATCTAGAAGAATGCAAGCAAAAATGCTTGAGGAATTGTTCTTGTATGGCTTATGCCAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTATGGATAGGTGATATCATTGACCTGAAAATAATTCCTGGTGCTGGACAAGATTTATATGTTAGGATGCTAGCATCAGAATTAGTCAAGCAAAGAGAGAAACATAAAAGATTGAATCCTAAGGTGAAGATTGCTTTGGTTGTGATTGCCGCGGGTGTAGTTTTGGCTATCCTCTTCATATGCTTATACATTTTCAAACAGAGATCAACCTTCAAAGATGACCATGAGAAATTAGAAGCTGAAGACTTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACTAATAATTTCTCACTTGATAATAAGCTTGGAGAAGGTGGCTTTGGACCAGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCTGTGAAGAGACTTTCAAAGAGTTCTGGACAGGGAATGACTGAGTTCAAGAATGAAGTAATCCTAACTGCAAAGCTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATTCAAGGAGATGAGAAAATGCTAGTTTACGAGTACATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATGAGACACGACGTGGACTATTAAACTGGTCGCAACGATATCACATTATCTGTGGGATTGCAAGAGGACTTGTGTATCTTCATCAAGATTCCAGATTGAGGATTATACATAGAGACTTAAAAGCAAGTAACGTTTTACTTGACATGGACATGAATCCAAAAATTTCTGATTTTGGTCTTGCTAAAACTTGTGGAGGGGATCAAACTGAAGGAGAGACCGTACGAGTGGTTGGAACCTATGGATATATGGCCCCAGAATATGCTTTCGATGGACAATTCTCAATCAAATCCGATACATTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAGGATTTCGTCACTCAAATGACCAAAATCTGATTGGTTATGCATGGCAATTATGGAAAGGGGGAAATCCAGCAGAATTGATTGATTACACAATTCATGAAACGTGCAATTTCTCAGAGAGTCGCGACGCTGTAGAACGACAGGAAAAGGAGATTTTTCGGGCCAGCGTCGCGACGCTATGCCTTCAGCGTCTCGACGCTGATGGCAGTTTCGCTCAATCACGCAGCTGGTTTGATCCGGTTCAACACAAAATGGACCGGTTCTTGGAGTATTTGGTTCGGGTTGAGCAATTTGGGTCCGGTTCGGGCGATTCTGACACGGTTCGGGCTGGTTCTGAGCGGTTCGAGGCAGTTCAGACCAATTACAAGGCGGTTTAG 2643 43.44 MYARDSVHVRIVHSQILTSLSLDCSRSRHARPDLVMSSNARPHRRPRVGICQSMPTLTCPYTYKRIAQDLNRNMSVSAIDSLTSQNPFLSDGLTLLSRNGDFELGFFSPGLPSNRYLGIWFKNRRGPTSVWVANRENPINDSSGVLVMSVSTGNLTLYSHNNTAVVWSAKLLRKVPNGVLQLLDTGNLVLRDGEDANPQNYSWQSFDYPTDTLLPGMKLGWDLRNKIDRRLSAWKNLNDPSPGSLSWRMELHEYPETVMWNGSKEFFRHGPWNGVRISSWPIGLAPNLVLHFVSNEDEVYYQYTVIDESYTVMLVLNQSINVRTVYLWSVSERKWTVYNSLPRDFCDNYALCGPYGYCDFRVVPSCNCLQGFKPRSPENWKGGEFGDGCERKKPLNCGDEVGFAQFNQMKLPDTTHTWVNNSMNLEECKQKCLRNCSCMAYANTNISGSGSGCALWIGDIIDLKIIPGAGQDLYVRMLASELVKQREKHKRLNPKVKIALVVIAAGVVLAILFICLYIFKQRSTFKDDHEKLEAEDLELPLFDLSLINSATNNFSLDNKLGEGGFGPVYKGKLTNGQDIAVKRLSKSSGQGMTEFKNEVILTAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDETRRGLLNWSQRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGETVRVVGTYGYMAPEYAFDGQFSIKSDTFSYGILLLEIISGKRSRGFRHSNDQNLIGYAWQLWKGGNPAELIDYTIHETCNFSESRDAVERQEKEIFRASVATLCLQRLDADGSFAQSRSWFDPVQHKMDRFLEYLVRVEQFGSGSGDSDTVRAGSERFEAVQTNYKAV 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15602742 15612452 + Maker00026553 Lcy6g1266 635710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1266 880 Pfam S-locus glycoprotein domain 267 375 IPR000858 GO:0048544(InterPro)
Lcy6g1266 880 SMART serkin_6 554 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1266 880 Gene3D Transferase(Phosphotransferase) domain 1 630 824 - -
Lcy6g1266 880 ProSiteProfiles PAN/Apple domain profile. 397 478 IPR003609 -
Lcy6g1266 880 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 75 206 - -
Lcy6g1266 880 Pfam Protein tyrosine and serine/threonine kinase 555 753 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1266 880 SMART ntp_6 398 477 IPR003609 -
Lcy6g1266 880 Gene3D - 75 206 IPR036426 -
Lcy6g1266 880 ProSiteProfiles Protein kinase domain profile. 554 833 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1266 880 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 80 822 - -
Lcy6g1266 880 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 519 629 - -
Lcy6g1266 880 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 630 825 - -
Lcy6g1266 880 ProSitePatterns Serine/Threonine protein kinases active-site signature. 675 687 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1266 880 SMART blect_4 86 209 IPR001480 -
Lcy6g1266 880 Pfam PAN-like domain 398 463 IPR003609 -
Lcy6g1266 880 SUPERFAMILY alpha-D-mannose-specific plant lectins 129 240 IPR036426 -
Lcy6g1266 880 CDD B_lectin 89 209 IPR001480 -
Lcy6g1266 880 SUPERFAMILY Protein kinase-like (PK-like) 539 791 IPR011009 -
Lcy6g1266 880 Pfam D-mannose binding lectin 128 235 IPR001480 -
Lcy6g1266 880 PIRSF SRK 65 823 IPR024171 GO:0004674(InterPro)
Lcy6g1266 880 ProSiteProfiles Bulb-type lectin domain profile. 80 203 IPR001480 -
Lcy6g1266 880 Gene3D Phosphorylase Kinase; domain 1 527 629 - -
Lcy6g1266 880 CDD PAN_AP_plant 394 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1252 Lcy-Chr6:15124161 Lcy6g1266 Lcy-Chr6:15602742 0 dispersed
Lcy6g1266 Lcy-Chr6:15602742 Lcy9g1248 Lcy-Chr9:37049189 3.03E-214 dispersed
Lcy6g1266 Lcy-Chr6:15602742 Lcy6g1267 Lcy-Chr6:15708705 0 tandem
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1266 Lcy-Chr6:15602742 1.47E-71 wgd
Lcy2g1862 Lcy-Chr2:32774828 Lcy6g1266 Lcy-Chr6:15602742 9.62E-14 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy6g1266 Lcy-Chr6:15602742 2.44E-112 wgd
Lcy5g1950 Lcy-Chr5:42317982 Lcy6g1266 Lcy-Chr6:15602742 2.99E-64 wgd
Lcy6g1266 Lcy-Chr6:15602742 Lcy6g1627 Lcy-Chr6:29573455 1.65E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66038 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1266 - - - 0.0