Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1267 ATGCCGTCAAATCAAATGGTTAGGTACCTTTCTCAAAAAAGAAAAAAAAAATGGTTAGGTACCACAGCTGCCGTCCTCCGGACCAAGTCCACTCGAAGAACCGTTCTATTTCCACGTCGATGTCCCTCATTGTCAAGCAAGTCTGTTACTGCCCTTGATTCCTTAACGGCTCAAAACCCATTTCTAAGAGATGGGCTTAGTCTGTTTTCCGAAAATGGAAACTTCGAACTGGGTTTCTTCAGTCCAGGTCTTTCCGGCGACCGTTACTTGGGAATCTGGTTCAAGGATCGGCGAGGTCCGACGTCCGTTTGGGTTGCGAACAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTTGCGATGAACATTACAACAGGAAATCTTACACTCTATAGCCACAATTCCACTGCAATTGTTTGGTCCGCCAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGAAACGGGGAGGATGAAAATCCCCAAAACTACTCCTGGCAAAGCTTTGATTACCCAACTGACACTCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATTGATAGAAGATTAGAGGCTTGGAAGAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCCGAGTCTGTTATGTGGAATGGTTCCAAAGAATACTTCAGGCATGGCCCATGGAATGGTGTGAGAGTCACTAGTAGACCACTAGGCATAGCTCCAATTCTGAACTTCAACTTCGTTTCAAACGAGGATGAGGTTTACTACCAATACTCTGTTGTAAACAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAACTACATGCGTATAATGTACTTGTGGTCTGCATCTGAAAGACAGTGGAGAGTTTACACTTCATTGCCAAGAGATTTCTGTGACAATTATGGCCTATGTGGCCCCTATGGATATTGTGATATAAGGGTCACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGAAGGCAGGGGAATTTGCGGACGGTTGTGAACGGAACAAGCTGATGAATTGTGGTAATGAAGTTGGGTTTGCACAATTCAACCAGCTGAAATTGCCAGACACAAAGCATACTTGGGTCAATAAAAGCATGAATCTTGAAGAATGCAAGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGCAGTGGTAGTGGCTGTGCCATATGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAGGATTTATATGTCAGGATGCTAGCATCAGAATTAGATGACCATGAGAAAATAGAAGCTAAAGACCTGGAGCTTCCGTTGTTTGATCTATCCTTGATTAATAGTGCCACAAATAACTTCTCGCTTAATAACAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGGTAAGCTTACAAATGGACAAGATATTGCAGTGAAGAGACTTTCACAGAGTTCTGGACAGGGAATGAATGAGTTTAAGAACGAAGTAATCCTAATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGACGAGAAAATGCTAGTTTACGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATCGGACACAACGCCAATTATTAGACTGGTCAAAACGATATCACATTATTTGTGGAATTGCTAGAGGACTCATGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGCAATGTATTACTTGATATGGATATGAATCCAAAAATCTCTGATTTTGGTCTGGCTAAAACTTGTGGTGGGGATCAAACCGAAGGACGGACGATAAGAGTGGTTGGAACTTATGGATATATGGCACCGGAATATGCTTTTGATGGACAATTCTCAGTGAAATCTGATGCATTTAGTTATGGTATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGTAGAAGTTTCTGCCACTCGACCGACCAAAATCTTATTGCATATGCATGGCGATTGTGGAAAGAAGGAAATCCAGAAGAATTAATTGACGATACCATTCGAGAAACATGTACCCTTTCAGAGGTACTGAGATGTATCAATATTAGTTTGTTGTGTGTTCAACAGCATCCCAATGATCGACCCACAATGTCATCCGTGGTTATGATGTTAGGTTGTGAAATTCCTTTGTCACAACCAAAACAACCAGGATTTTTCGTAGAAAATGAAGTCGTTGCAATGAACAACGGGTCGAGTAACGATAAATCAACTTCAGCTAATGAATTAACTATTACCCTCCCAGATCCCAGGTAA 2400 41.38 MPSNQMVRYLSQKRKKKWLGTTAAVLRTKSTRRTVLFPRRCPSLSSKSVTALDSLTAQNPFLRDGLSLFSENGNFELGFFSPGLSGDRYLGIWFKDRRGPTSVWVANRKTPINDSSGVLAMNITTGNLTLYSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRNGEDENPQNYSWQSFDYPTDTLLPGMKLGWDLRNNIDRRLEAWKNPNDPSPGNLSWRMELHEYPESVMWNGSKEYFRHGPWNGVRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYMRIMYLWSASERQWRVYTSLPRDFCDNYGLCGPYGYCDIRVTPSCKCLEGFKPRSPDSWKAGEFADGCERNKLMNCGNEVGFAQFNQLKLPDTKHTWVNKSMNLEECKQKCLRNCSCMAYANTNISGSGSGCAIWIGDLIDLKLIPDAGQDLYVRMLASELDDHEKIEAKDLELPLFDLSLINSATNNFSLNNKLGEGGFGPVYKGKLTNGQDIAVKRLSQSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNKSLDFFIFDRTQRQLLDWSKRYHIICGIARGLMYLHQDSRLRIIHRDLKASNVLLDMDMNPKISDFGLAKTCGGDQTEGRTIRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRSFCHSTDQNLIAYAWRLWKEGNPEELIDDTIRETCTLSEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEVVAMNNGSSNDKSTSANELTITLPDPR 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15708705 15712327 + Maker00026572 Lcy6g1267 635711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1267 799 Pfam PAN-like domain 370 436 IPR003609 -
Lcy6g1267 799 CDD PAN_AP_plant 368 449 - -
Lcy6g1267 799 SMART blect_4 59 182 IPR001480 -
Lcy6g1267 799 Pfam Protein tyrosine and serine/threonine kinase 484 752 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1267 799 Gene3D Hepatocyte Growth Factor 367 447 - -
Lcy6g1267 799 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 559 761 - -
Lcy6g1267 799 SUPERFAMILY Protein kinase-like (PK-like) 468 753 IPR011009 -
Lcy6g1267 799 Gene3D - 49 179 IPR036426 -
Lcy6g1267 799 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 57 767 - -
Lcy6g1267 799 MobiDBLite consensus disorder prediction 778 793 - -
Lcy6g1267 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 102 213 IPR036426 -
Lcy6g1267 799 Pfam S-locus glycoprotein domain 240 348 IPR000858 GO:0048544(InterPro)
Lcy6g1267 799 MobiDBLite consensus disorder prediction 778 799 - -
Lcy6g1267 799 Gene3D Phosphorylase Kinase; domain 1 456 558 - -
Lcy6g1267 799 ProSiteProfiles Bulb-type lectin domain profile. 53 176 IPR001480 -
Lcy6g1267 799 Gene3D Transferase(Phosphotransferase) domain 1 559 760 - -
Lcy6g1267 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1267 799 PIRSF SRK 31 465 IPR024171 GO:0004674(InterPro)
Lcy6g1267 799 PIRSF SRK 451 799 IPR024171 GO:0004674(InterPro)
Lcy6g1267 799 CDD STKc_IRAK 489 753 - -
Lcy6g1267 799 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 448 558 - -
Lcy6g1267 799 Pfam D-mannose binding lectin 101 208 IPR001480 -
Lcy6g1267 799 SMART serkin_6 483 753 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1267 799 SMART ntp_6 371 450 IPR003609 -
Lcy6g1267 799 CDD B_lectin 62 182 IPR001480 -
Lcy6g1267 799 ProSiteProfiles PAN/Apple domain profile. 370 451 IPR003609 -
Lcy6g1267 799 ProSiteProfiles Protein kinase domain profile. 483 767 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2109 Lcy-Chr3:48088559 Lcy6g1267 Lcy-Chr6:15708705 1.19E-127 dispersed
Lcy5g1954 Lcy-Chr5:42382457 Lcy6g1267 Lcy-Chr6:15708705 1.77E-186 dispersed
Lcy5g1958 Lcy-Chr5:42435742 Lcy6g1267 Lcy-Chr6:15708705 4.02E-250 dispersed
Lcy5g1960 Lcy-Chr5:42450104 Lcy6g1267 Lcy-Chr6:15708705 1.07E-222 dispersed
Lcy5g1961 Lcy-Chr5:42467663 Lcy6g1267 Lcy-Chr6:15708705 3.77E-223 dispersed
Lcy5g1997 Lcy-Chr5:42978128 Lcy6g1267 Lcy-Chr6:15708705 1.08E-127 dispersed
Lcy5g2419 Lcy-Chr5:46964286 Lcy6g1267 Lcy-Chr6:15708705 4.08E-92 dispersed
Lcy6g1267 Lcy-Chr6:15708705 Lcy9g1247 Lcy-Chr9:37044292 4.95E-219 dispersed
Lcy6g1266 Lcy-Chr6:15602742 Lcy6g1267 Lcy-Chr6:15708705 0 tandem
Lcy3g0146 Lcy-Chr3:3700277 Lcy6g1267 Lcy-Chr6:15708705 1.53E-51 wgd
Lcy6g1267 Lcy-Chr6:15708705 Lcy9g0416 Lcy-Chr9:11658724 4.60E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66039 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1267 - - - 0.0