Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1271 ATGCCAACAGTTTGGTTGTCCTTGAAGAAATCTTTGCACTGCAAATCAGAGCCATCAGAAGTTCATGACCCAAAAAGCAGAAGGAATTTGGGAGCAATTTTGACAAGAAAAACAGGGGGAGGAGGAAGATCAGGTTGTTCAAGGTCCATTGCAAATCTCAAAGATGTCATCCATGGCGGCAGCAAGAGGCATTTGGATAAGCCCCCAAGCTGCAGCCCAAGATCCATTGGCAGCAGTGAGTTTCTCAACCCAATAACCCACGAAGTCATTCTCAGCAACTCAAGGTGCGAGCTCAAAATCACCGGTTTCCACGGCGGTTTCAGCCAAGACGTGCCTGCCGCCGCCGACCCTCACGGCGGCGCTAGTGGCGGTTCCACCTTTGTGGGGACTCTGACACCGGGCACGCCGGGCCCCGGTGGCCACCCCACAATGCACTACTTTAATCCTTCGTTTAGGTCTTCTTCCAGAAAGTTCCCTTTTAGAGAGGGATTTGGAAGCTCTAATAAATCTGGCGGCGGCGGTGGCGGGGGAGCTCGCGGCGGCGGTGGTAGTGGTGGAGTTCATTCGAGCAACAGAATCTCTTTGGAAACAGAGATTGGTGGGAATGGGTCTTCTTCTATGGTTACCTGTCATAAATGTGGAGAGCAGTTCAACAAATGGGATGCTGCTGAAGCACATCATCTTTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATTGTGGAGATCATATGCAGGACAAGCTGGTTGAAGTCTGAGAATCAATCTGGTAGAATAGAAAGAGTCCTGAAAGTTCACAATATGCAGCGAACGCTGGCCCGGTTCGAGGAGTATCGCGAGACGGTTAAGATCAAAGCCAGCAAACTCCCAAAGAAGCATCCTCGGTGCCTTGCCGATGGAAATGAGCTCCTGCGATTCTATGGCACGACAGTTGCATGCTCGCTCGGCCTGAATGGCTCCTCCAGCCTCTGCATATCAGAGAAATGCTGCGTCTGCAGGATCATTCGTAACGGGTTCTCAGCAAAGACAGAGATGAAAGAAGGGATAGGCGTCTTCACAACTTCCACGAGTGCGAGAGCGTTCAGCTCGATCGATGAGTCGGGAGGGGATGAGATGATGACGAGGAAGGCGATGATAGTTTGCAGGGTGATTGCTGGGAGAGTTCACAGGCCATTGGAGAACATTCAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCTGGGAAAGTTGGGTTGCATTCAAACATAGAAGAGCTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1332 50.08 MPTVWLSLKKSLHCKSEPSEVHDPKSRRNLGAILTRKTGGGGRSGCSRSIANLKDVIHGGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGFSQDVPAAADPHGGASGGSTFVGTLTPGTPGPGGHPTMHYFNPSFRSSSRKFPFREGFGSSNKSGGGGGGGARGGGGSGGVHSSNRISLETEIGGNGSSSMVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFSSIDESGGDEMMTRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 15869757 15871956 + Maker00026574 Lcy6g1271 635715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1271 443 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 442 - -
Lcy6g1271 443 Gene3D - 233 442 - -
Lcy6g1271 443 MobiDBLite consensus disorder prediction 158 191 - -
Lcy6g1271 443 SUPERFAMILY ADP-ribosylation 233 442 - -
Lcy6g1271 443 MobiDBLite consensus disorder prediction 115 140 - -
Lcy6g1271 443 FunFam C2H2-like zinc finger protein 232 442 - -
Lcy6g1271 443 ProSitePatterns Zinc finger C2H2 type domain signature. 210 231 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1194 Lcy-Chr10:34602364 Lcy6g1271 Lcy-Chr6:15869757 1.71E-72 transposed
Lcy8g1763 Lcy-Chr8:44109953 Lcy6g1271 Lcy-Chr6:15869757 1.53E-55 transposed
Lcy9g2259 Lcy-Chr9:47104776 Lcy6g1271 Lcy-Chr6:15869757 1.11E-59 transposed
Lcy5g1152 Lcy-Chr5:24749616 Lcy6g1271 Lcy-Chr6:15869757 1.79E-56 wgd
Lcy6g1271 Lcy-Chr6:15869757 Lcy9g1232 Lcy-Chr9:36782845 1.08E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20309 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1271 - - - 0.0