Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1296 ATGTCCGTCTCCAGCGCCACCTACATGTTCGGCCTCTACTCCTCCGACATCAAATCCTCCTTGGGCTATGACCAAGCCACCCTTAATCTGCTCACCTTCTTCAAGGATTTAGGCGGCAATGTCGGCGTCATCGGCGGCCTCATCAACGAGGTCGCCCCGCCGTGGGTGGTTCTTCTAATCGGCGCCGTTATGAACCTCTTCGGCTACATGATGATTTGGCTGGCCGTAACCAGTCGGATCCCGAAGCCCCAGATCTGGCATATGTGTCTCTACATTTGCATTGGAGCTAATTCTCAGACGTTTGCGAATACAGGGGCTCTCGTCACTTGCGTCAAGAACTTCCCGAAGAATGGCGACAACGTTTTGGGCCTTTTGAAGGGCTTCATCGGATTGAGCGGCGTCATTTTGACCCAGCTTTACCATGCGTTTTACGACAACTGTAAAAGAAATTACCTCAGAATTATGTTGTAA 471 51.17 MSVSSATYMFGLYSSDIKSSLGYDQATLNLLTFFKDLGGNVGVIGGLINEVAPPWVVLLIGAVMNLFGYMMIWLAVTSRIPKPQIWHMCLYICIGANSQTFANTGALVTCVKNFPKNGDNVLGLLKGFIGLSGVILTQLYHAFYDNCKRNYLRIML 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17132941 17133411 + Maker00026571 Lcy6g1296 635740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1296 156 Pfam Nodulin-like 1 152 IPR010658 -
Lcy6g1296 156 SUPERFAMILY MFS general substrate transporter 6 140 IPR036259 -
Lcy6g1296 156 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 2 154 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1296 Lcy-Chr6:17132941 Lcy7g0626 Lcy-Chr7:5718486 1.30E-72 dispersed
Lcy10g0514 Lcy-Chr10:13212641 Lcy6g1296 Lcy-Chr6:17132941 7.78E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1296 - - - 0.0