Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1339 ATGGCGGAGGAGTTTCAAAGCACTGGAAACTGGTGGGATGCTTCTAGAACCCGCTACGACGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCTCCGCCGCCGCCGCCGACCCCAATTTGCACATCATGGGCTTGGGCCTCGATTGGAACCAACCCCTCTTTCGGGGCGGCGGAGAGAAGGCGGCGGAGAGCAGTTTCCGGTCGATGCTGCAGGCGGATAACATGAATTTAAATATGCAAGAAACAGGAGGAGGAGGACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGATTCAATGGATGAGATCGGAGAAGCTTTATTCAGGGGACTCCACCGAATTCAAGCCCATCAACAACAACAGAGGCTTCTCCTTAGACCATCATCACCAGCCCTTCACCCCTTCTCACTACACCATAGACACCGCCGCCGCCACTCTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCGGCGGCGAACAGCAACCTAATTCGGAGGGTATGAACTTCCCAGCTTACAGTGGGCATTTCGGGATGAACTCCGGCGAGCTAATGACGGCGGCGTCGTGGTCCAACTCTAAAGTGCCTCAGTTCTTGAGAAACTCGCCGCCGAAAGGGACGACGCCCCACAGTCAGTCGTTGCAGTTTTCTAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGGCCGAGCTTTTTCCCGCCGTCGTACAACGCGGCTGCAGCCTTGGCCGAGAAATCAAAGAATATATCAGAGGTTGGTGATTCGGGAACAGTGGTGAAAAAAAGTGGGAATGTCGATCATAATCAACAATCCGGTGGTAGTGCTGCTGCTTCTGCCAAAAGGCCTCGAAATGAAACTACTCCTTCCCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAACAACAACATCAGCACCAGAGCTGCGAGAAATCAAAGGATGGAGAAGGAGGAAAACAAGATCTAAGAAGCCGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGATAA 1272 50.94 MAEEFQSTGNWWDASRTRYDAGISPSSSSITTFVDHSDSSAAAADPNLHIMGLGLDWNQPLFRGGGEKAAESSFRSMLQADNMNLNMQETGGGGQQQQQQQQQQQQIQWMRSEKLYSGDSTEFKPINNNRGFSLDHHHQPFTPSHYTIDTAAATLYGNSATLLQGLLAGGEQQPNSEGMNFPAYSGHFGMNSGELMTAASWSNSKVPQFLRNSPPKGTTPHSQSLQFSNNTAFWNASDMKDVRPSFFPPSYNAAAALAEKSKNISEVGDSGTVVKKSGNVDHNQQSGGSAAASAKRPRNETTPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQHQSCEKSKDGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18534214 18537653 - Maker00026541 Lcy6g1339 635783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1339 423 Gene3D - 310 378 IPR036638 GO:0046983(InterPro)
Lcy6g1339 423 MobiDBLite consensus disorder prediction 269 308 - -
Lcy6g1339 423 MobiDBLite consensus disorder prediction 206 225 - -
Lcy6g1339 423 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 84 402 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Lcy6g1339 423 FunFam Transcription factor bHLH123 family 310 373 - -
Lcy6g1339 423 CDD bHLH_AtbHLH_like 306 357 IPR045239 -
Lcy6g1339 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983(InterPro)
Lcy6g1339 423 MobiDBLite consensus disorder prediction 269 300 - -
Lcy6g1339 423 SMART finulus 311 355 IPR011598 GO:0046983(InterPro)
Lcy6g1339 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 364 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0405 Lcy-Chr1:3600467 Lcy6g1339 Lcy-Chr6:18534214 9.44E-15 dispersed
Lcy2g0836 Lcy-Chr2:7548881 Lcy6g1339 Lcy-Chr6:18534214 7.67E-34 dispersed
Lcy4g0197 Lcy-Chr4:2461186 Lcy6g1339 Lcy-Chr6:18534214 7.96E-16 dispersed
Lcy4g0199 Lcy-Chr4:2489086 Lcy6g1339 Lcy-Chr6:18534214 7.96E-16 dispersed
Lcy6g1339 Lcy-Chr6:18534214 Lcy9g2224 Lcy-Chr9:46801103 1.72E-24 dispersed
Lcy11g1058 Lcy-Chr11:31976109 Lcy6g1339 Lcy-Chr6:18534214 2.02E-29 transposed
Lcy3g1249 Lcy-Chr3:38183760 Lcy6g1339 Lcy-Chr6:18534214 2.88E-18 transposed
Lcy4g0382 Lcy-Chr4:4758739 Lcy6g1339 Lcy-Chr6:18534214 1.32E-82 transposed
Lcy7g1541 Lcy-Chr7:28160233 Lcy6g1339 Lcy-Chr6:18534214 3.90E-30 transposed
Lcy2g1721 Lcy-Chr2:26722667 Lcy6g1339 Lcy-Chr6:18534214 1.11E-07 wgd
Lcy5g1149 Lcy-Chr5:24701567 Lcy6g1339 Lcy-Chr6:18534214 2.59E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1339 - - - 0.0