Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1353 ATGGTATCCCCCGAAGCCACCAACTGGCTCTTTGATTATGCGTTAATGGACGATATTCCTGTTGCCGATGCCAATTTCTCTGCACCCACTACCGGTTTCTCTTGGTCCATTCCACCCTTGAACGCCTCCTCCAATGTCAGGGGGCTATCATTTTTGCATTTACTCATTAAACGTTTTGCTCCATTTTTTACTAGCGCGGAAATTGAAGGATCAATGTTGGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGTTTCTGGAATTGGGTGCTATTCTGGAGCCTGGAAAGCCACCAAAGACCGATAAGGCTGCCATTTTGATCGATGCTGTTCGAATGGTTTCTCAGTTTCGTGGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAATTGGAGAAAGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCAACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCGCAAGATCACGTGCTCCGCCCTCCTGTTGCTTAA 681 47.43 MVSPEATNWLFDYALMDDIPVADANFSAPTTGFSWSIPPLNASSNVRGLSFLHLLIKRFAPFFTSAEIEGSMLESDGLKEPGSKKRFLELGAILEPGKPPKTDKAAILIDAVRMVSQFRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKLEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18984908 18988905 - Maker00026682 Lcy6g1353 635797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1353 226 CDD bHLH_AtILR3_like 86 147 - -
Lcy6g1353 226 PANTHER BHLH TRANSCRIPTION FACTOR 85 226 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Lcy6g1353 226 Coils Coil 122 170 - -
Lcy6g1353 226 CDD bZIP 134 165 - -
Lcy6g1353 226 Gene3D - 108 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1655 Lcy-Chr11:40403124 Lcy6g1353 Lcy-Chr6:18984908 2.44E-23 dispersed
Lcy5g1978 Lcy-Chr5:42725913 Lcy6g1353 Lcy-Chr6:18984908 8.96E-36 dispersed
Lcy6g1353 Lcy-Chr6:18984908 Lcy8g1461 Lcy-Chr8:41267529 2.13E-54 dispersed
Lcy6g1353 Lcy-Chr6:18984908 Lcy9g1226 Lcy-Chr9:36715435 1.33E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1353 - - - 0.0