Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1379 ATGCAATTGCCAATGCGAGATTTGATCTCCGGTTCCTTCCTTATTTCCCTTCTTGTTTTTTCCCAATTTTCCCTCTCTTCTGCACAAGACTACGTCATCGGCGACCCCACCAAGCCCGCCGCCGGCGACGACGACGCCGCCGATGCCGACGCGAAGCCGGCAGCCCCACCGCCGGAGCAGAACGACTGCAATGGCATATTCTTGTCCTACACTTTCGTTTCGCGTGAGAAGGAGCTTCCCCGTTTGAAAAATGCGACGGCGCAGGCTTGGGCGTTCAAATCGCAGGTGCTGATTCTGAACGGCGGAACGACGGAGCTCAAGGCCTGGAAGATGTACGTTGGATTTCACAACAAGGAGATTCTGGTCTCGGCCACCGGCGCCGTCGTGGAGGACGGCTCGGATTTCCCTGTAGACGTTGGGAATGGGACGACTTTGACTGGGTATCCGATGACGGATCTGAAAACGTCGATTGATACCGCCGGAGATATCAATCAGATTCAGGCGACGGTGGACCTTGTTGGATCGCAGTTCGGCATCAAGCCGCCTAGTGTTCCAATGCCTAAGACGATTCGGCTTGCTAACGACGGATATAAGTGCCCTGCGCCTCGTCGTCGCGGTAAAAGAACATTGCACGTATGCTGCAAAAAGGATCCAAAGTATAAGGTGAAAGAACCGAAGAAAACAAAATTCTTGGCTCGACGAAATGGAGATCTGTCACTGTCGTATGATGTGCTGCAAGCTTATGGAAACAACTATATGGCTCAAGTGACAATTGACAACAACAACCCGCTGGGGCGATTGGATCACTGGAACTTGACCTGGGAATGGATGAGAGGAGAGTTCATTCAAAGCATGAGAGGAGCTTATACTCATACTAGAGACTTGGCTCAATGCGTTTACGGCACCGCAGGCCAATACTATCAAGATTTCGACTTCTCTCAGGTCATGAGTTGTGATAAGAGCCCCATTATCGCAGATCTTCCAGCCGATCGAGCCAACGATGATAAGATCGGCAAATTGCCATTTTGCTGTAGGAATGGAAGCTTGTTGCCAACATTGATGGATGAGAGCAAATCAAGGTCTGTTTTTCAGCTAACAGTCTTTAAGCTTCCACCAGACATGAACCGAACCGCTCTTAATCCACCGCAGAAATGGAAGATCTCCGGTCTTCTCAACCCCCAATATGTATGTGGGGCTCCCATCCGAGTCGATCCGACCAAGTTTCCAGACCCGACCGGCCTCCAGGCCACGAGCACGGCCATCGCAAGTTGGCAAGTTGTGTGCAACATTACAAAGCCAAAGGTGCAGCAATCAAAATGTTGTGTTTCATTTTCAGCATATTACAATGACTCTGTAATTCCTTGCAATACTTGTGCCTGTGGGTGTGATGACACTGATACTTGCAATCCAAATGCACGTGCAATGATGCTCCCTCCAGAAGCACTTTTGGTGCCATTTAAAAACAGGACTGCAAAGGCAAAAGCTTGGGCTAAAATTAAACACTTGCCAATTCCAAAGAAGATGCCTTGCCCTGATAACTGTGGAGTTAGCCTCAATTGGCATATTAACTCTGACTATACCAATGGATGGTCAGCAAGACTAACACTGTTCAACTGGGAAGATTATCCATTTGAGGATTGGTTTACTGCTATTCAGTTGAACAAGGCCGGTCAGGGTTACGAAAACGTTTATTCCTTCAACGGAACCAAGCTTCCCAACGTCAAAAATACCATCTTCCTCCAAGGCTTGCCTGGTTTATCATACTTGATGGGAGAGGTCAATGGAACCAATCCTAAATCCGATCCAAGAGTTCCAGGAAAGCAGCAATCCGTCATTTCTTTCACCAAGAAGGGCCTCCGCAACATCGACATACAAAAAGGTGACGGTTTCCCAACCAAAGTATTTTTCAACGGCGAAGAATGTGCACTTCCAAAGCATTTTCCCATTGCAAGTTCAGCCCACCGGCCTCGCCACGCTTTCATGCCGCTTATCTTCATCTTAGCCATTACTTTCGCGCATATAACACATCGCTTCCATTGA 2040 48.53 MQLPMRDLISGSFLISLLVFSQFSLSSAQDYVIGDPTKPAAGDDDAADADAKPAAPPPEQNDCNGIFLSYTFVSREKELPRLKNATAQAWAFKSQVLILNGGTTELKAWKMYVGFHNKEILVSATGAVVEDGSDFPVDVGNGTTLTGYPMTDLKTSIDTAGDINQIQATVDLVGSQFGIKPPSVPMPKTIRLANDGYKCPAPRRRGKRTLHVCCKKDPKYKVKEPKKTKFLARRNGDLSLSYDVLQAYGNNYMAQVTIDNNNPLGRLDHWNLTWEWMRGEFIQSMRGAYTHTRDLAQCVYGTAGQYYQDFDFSQVMSCDKSPIIADLPADRANDDKIGKLPFCCRNGSLLPTLMDESKSRSVFQLTVFKLPPDMNRTALNPPQKWKISGLLNPQYVCGAPIRVDPTKFPDPTGLQATSTAIASWQVVCNITKPKVQQSKCCVSFSAYYNDSVIPCNTCACGCDDTDTCNPNARAMMLPPEALLVPFKNRTAKAKAWAKIKHLPIPKKMPCPDNCGVSLNWHINSDYTNGWSARLTLFNWEDYPFEDWFTAIQLNKAGQGYENVYSFNGTKLPNVKNTIFLQGLPGLSYLMGEVNGTNPKSDPRVPGKQQSVISFTKKGLRNIDIQKGDGFPTKVFFNGEECALPKHFPIASSAHRPRHAFMPLIFILAITFAHITHRFH 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20045346 20048239 + Maker00026748 Lcy6g1379 635823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1379 679 PANTHER COBRA-LIKE PROTEIN 7 16 672 - -
Lcy6g1379 679 Pfam COBRA-like protein 252 431 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lcy6g1379 679 MobiDBLite consensus disorder prediction 36 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1368 Lcy-Chr11:37407930 Lcy6g1379 Lcy-Chr6:20045346 1.91E-277 transposed
Lcy9g1219 Lcy-Chr9:36599933 Lcy6g1379 Lcy-Chr6:20045346 1.45E-284 transposed
Lcy3g0306 Lcy-Chr3:9754620 Lcy6g1379 Lcy-Chr6:20045346 2.20E-25 wgd
Lcy3g0270 Lcy-Chr3:8923368 Lcy6g1379 Lcy-Chr6:20045346 1.52E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1379 - - - 0.0