Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1394 ATGATCTCTTCTTTGAGTCAATCTGCAAATACCATTAATGGGTCGGACATTGTTCTCCGGCGGAGGTCTCTGGCGCCAATCCGGCGGTTCTCGTGTCCACCGCCATTGCCGGTGCAAAAACCCCAAGGTTCCGTTGTGTGTATGAAAAATGCTCTTCATATCTCCTCGGTTTCCAATTTTGGGCCACTGGTAACTCGGAAGAGTGATTTGATTACGAGCAAAGCTTATGAGGCTGACCGATCGCAGCCGATTGAGTCGAACATTGAACTGACGATGGCCGAAGCGCCGTCGGAGGCGGCGAAGAAGGTGAAGATCGGACTGTATTTCGCTCTCTGGTGGGGTTTGAACGTCGTGTTCAACATTTATAACAAGAAGGTTTTGAATGCGTTTCCATATCCATGGCTGACCTCTACACTTTCTCTGGCTGTTGGCTCTCTCATCATGTTAGTCTCTTGGATGACGAGGATCGCTGAGGCACCCAAGACTGATTTCGATTTTTGGAAGTCTTTGCTCCCAGTTGCTGTGGCCCATACGATTGGACATGTAGCGGCAACAGTGAGCATGTCAAAGGTTGCCGTCTCATTCACTCATATCATCAAGAGTGGTGAGCCTGCATTTAGTGTATTGGTTTCAAGGTTCCTATTGGGTGAGACTTTTCCTGTTCCTGTCTATCTCTCGCTTCTCCCGATCATCGGTGGCTGTGCACTTGCTGCCGTGACTGAGCTCAACTTCAACATGACAGGTTTCATGGGAGCCATGATATCAAACTTGGCATTTGTCTTCAGAAACATATTTTCCAAGAAAGGCATGAAGGGGAAGTCGGTTAGTGGAATGAACTACTACGCCTGTCTGTCCATATTGTCCCTTTTGATTCTTACCCCATTCGCCATTGCTGTCGAAGGACCGCAGATGTGGGCTGCTGGTTGGAAAACAGCTCTCTCTGAGATCGGACCTAATTTCGTATGTGCTCAAATTTTCATGGCTATCCCTTTGATTTCATATGAAGATATCATTTTGGTTTTGAAAGTATATTGTTTTTCTCTTCATGATAGGTGGGTAGCAGCACAGAGTGTGTTCTATCACCTCTACAACCAAGTATCCTACATGTCACTGGACGAGATTTCTCCCTTGACATTTAGCATTGGTAACACCATGAAACGTATATCTGTCATAGTTTCTGCCATCATCATCTTCCGCACACCTGTCCAGCCCGTCAACGCTCTTGGAGCTGCGATCGCCGTCCTCGGGACCTTCCTGTATTCCCAGGAGACTCAGAACTTACATTCATCATGTAGTATACACTTAAAAGGAATTGGGAACGGGATCGAAGCTTTTGAGAAGCGTCGGGTTTTCAATATGGCGGCGAGATAG 1371 46.97 MISSLSQSANTINGSDIVLRRRSLAPIRRFSCPPPLPVQKPQGSVVCMKNALHISSVSNFGPLVTRKSDLITSKAYEADRSQPIESNIELTMAEAPSEAAKKVKIGLYFALWWGLNVVFNIYNKKVLNAFPYPWLTSTLSLAVGSLIMLVSWMTRIAEAPKTDFDFWKSLLPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPVPVYLSLLPIIGGCALAAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLILTPFAIAVEGPQMWAAGWKTALSEIGPNFVCAQIFMAIPLISYEDIILVLKVYCFSLHDRWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQETQNLHSSCSIHLKGIGNGIEAFEKRRVFNMAAR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20446449 20450523 + Maker00026752 Lcy6g1394 635838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1394 456 SUPERFAMILY Multidrug resistance efflux transporter EmrE 145 239 - -
Lcy6g1394 456 Pfam Triose-phosphate Transporter family 104 421 IPR004853 -
Lcy6g1394 456 PANTHER SOLUTE CARRIER FAMILY 35 99 422 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0432 Lcy-Chr1:3821619 Lcy6g1394 Lcy-Chr6:20446449 8.64E-188 dispersed
Lcy6g1394 Lcy-Chr6:20446449 Lcy7g0333 Lcy-Chr7:2808804 2.18E-59 dispersed
Lcy6g1394 Lcy-Chr6:20446449 Lcy9g1211 Lcy-Chr9:36492485 4.56E-223 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1394 K15283 - csv:101216838 694.115