Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1408 GAGGAGGCTGGAATTTATAAGGAAATCGTTGTTGTTCCTAAGGATGTGACTCATCTTACGATGTACGGCGATGGCCCAACCAAGACTGTCGTCACTAGTAGTCTGAACTTTATCGATGGCGTTCAAACATTCAAGACCGCAACTTTCTCTGCGATTGGAAGTGATTTCTTCGCGAAAGACATGGGATTCGTGAACACTGTTGGAGCTGCAAAGCACCAAGCTGTGGCGTTACGAGTCCAATCCGATAGATCGATCTTTTACAACTGCCAAATGGATGGCTATCAAGACACTCTCTACGCCCATACCCATCGCCAGTTCTACCGTGACTGTTCAATCAGTGGCACCATCGACTTCGTCTTCAGCAACTTGTTGCCTTTGTTCCAAAGCTGCCACTTCATGGGCGACCCGACTTACTTGCCATTCAAGGCCGTCAACAAGGCTTATTTGGGGGCGACCTTGGAAGGAATATTCATGAACCCTCATTATAGGCTCGATCTAGTCCGAGGGATGGTTGGCGTGGATGGCCCAAAACTTCTCAAAACGGCTCCTTCTGTAAGCCACTGCGGCGGCAAGCTGGGCAGAGTTGCGGAGATGATGACTTTCGGGGTCTCCACTTCCCAAGCCTCTTCGTTGAGAACTCAATGGCCTTCTTATTTCTTTCTGTGGCGGTCTAACTCTGTTTCTCACTCTTCTATTTCCATTTGCGCCTCCTCCAAGGCTCTCTACAGGGCTGAATTTGGTCCCCTGAAGAGTGTTGGTGGTGCTTCATCAAATATGAATATGTTTCATGCTTCCATTCAGTGCAGACAAAGTTCTTTCTTGACCACCAACTCATTTGTTGAAACTAGACATTATGACAATGAGAGGGCGTTTCTCTCTGATGTAAAGGCATGGTCTGATCGTACCATGCGGCTGAAGCAAGAGAAGCACTTTAGGTTTATGGAAACTGAGATCTTGACAAAGAATGATGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGGCTATGGGACTGCACATTCTTATAACATACCTTGTCCTCCATATTCTAAGGTTCAGACAAATTTGGGAAGCAAAATTTCCTATGCTAGTAAGGATTCTGATTGTATAAACCCTCCAACTAATATGTTATCAGATGGATTCAGGAAACAAGAACCTATGAATTTTGAACAAAGTGAGAATGTTGCAACCATAGATAGGATGATAAGTAGTGATAGGGCACCTTTACTTGAGACAATCAAGGTTTCACGTGGGGAATGCTATGGAGACATTAATTCTGATTCTGAGGGACGGACCATGAACGCTGGAAGTAATGATTTGCAGAACCAGGTTGTTCCTATGCAAAGCAACAAAAAGTATACCTTTTCTCAAAATGGAAAGAGTTCAATTACGCGTCTTGCACCAAATGTTTCACCTAATGGCAGAAAGCAAAATTTCTCTTTGGGAAGGGTGAATAGTGCACCAAAAACTTTGAAATTTACTGAAGTTGCTAATGGAATAAGGAGGGGTGTAGCTGTGGAAGAATTTCCTAAAATGACCATCAACGGAAGTGGCGCCAAGATGATGGAAGCACTTGCAACTGATCATAAGCCAGATATAAAAGAGAGGCTTAATGGTGTATATGATAGTGTTCTTGTTGTTGATAGTGTATCTGCGGCAAAGGAAGTTGTTTCAATGCTTACTACTAAGTACAGGACTCTTGTGCATGCTTGCGATACTGAGGTGGCCAAGATTGATGTGAAGCTAGAAACACCCGTTGACCATGGTGAAATAATATGCTTCAGCATTTATTCAGGACCAAAAGCAGATTTTGGGAATGGAAAGTCTTGCATCTGGGTTGATGTTCTTGATGGTGGCGGTAAGGAAATTTTGCTTCAATTTGCACCGTTCTTCGAAGATCCTTTGATCAGAAAGATGCGGGATTATCTGGATTACAAGGAGTTGATCGAGGAGTTCCTCCTCCATCTGCCTTTTCGGAAGAAGGGTAGATTTTTGTGGCAAGCTGGGATGTGTGCTTTGTTATGGAGCTCGTTGGGGGAAAGAATCAATAGAGTCTGGCACAACTACAGCTTTGACAATCACATTATTGAAAATTATGGGATTAAGGTTTCTGGCTTCCATGCTGACACGATGCACATGGCACGGTTATGGGATTCATCAAGACGAGCAAATGGTGGATATTCACTTGAAGCTCTTTCTGGTGATAGAAAGGTCATGTCTGGGGCTAAATTAGGCCAGGAAAAAGAGTTGATTGGTAAAGTATCCATGAAAACTATCTTTGGCCGCAAGAAGATGAAAAAGGATGGATCTGAAGGCAAACTTATAGTCATTCCTCCTGTTGAAGAACTTCAACGAGAAGACCGGAAACCATGGGTATCTTATTCTGCATTAGATTCAATATGCACGCTTAAGCTTTATGAGAGCTTGAAAAATAAACTGTCCGACATGCCCTGGGAGAGAGATGGAGAAATGATTCCGGGTAAAACAATGTTCAACTTTTATGAAGAATATTGGCAACCATTTGGTGAACTTCTTGTCAAAATGGAAACTGAGGGAATGCTGGTTGATAGGCCATATCTTGCTGAGATAGAGAAGTTGGCCAAAGCAGAACAAGAGGTTGCTGCCAACAGATTTCGTAACTGGGCTTCAAAGTACTGCCCTGATGCCAAGTACATGAATGTAGGAAGTGATGCACAAGTGCGCCAACTGCTTTTTGGTGGCACTTCTAATAGTAAGAACCCAGATGAGTTTCTTCCAACTGAAAGGACATTCAAAGTTCCAAACACTGAAAAAGTCACTGAAGAAGGGAAGAAAACTCCCAGTAAGTTACGGAATATTACTTTACATAGCATTAGTGTGGAAGAACTTTCAACAGAAAAGTACACAGCAACTGGTTGGCCATCAGTGAGTGGGGATGCTCTGAAGATCTTAGCGGGCAAGGTCTCTGCAGAATATGATGACTTCACTGATGACTTGCAGTCTGACAACGAGGTTGATAACGATTCTGAGACAATGCCTCACGAAGAAAACAAAAAGCGTATTATTCGTGAAAGTGCAAATATGTCTGATTATGGAACTGCTTTTGAAGCATTTGGATCGGAGGAGAAAGGCAGGGAAGCCTGTCATGCCATTGCTGCTTTATGCGAAGTCTGCTCAATTGATTCTTTGATATCAAATTTCATCCTTCCCTTACAGGGGAGCAATATATCTGGTAAGAATGGACGTGTACATTGTTCTCTAAATATCAACACAGAAACTGGTCGCCTCTCAGCTCGGAGACCAAATTTGCAGAATCAACCGGCTCTGGAAAAGGACCGGTATAAAATCCGTCAGGCATTTATAGCTGCACCTGGAAATTCTCTCATTGTTGCTGATTATGGCCAGTTGGAACTTAGGATTCTCGCTCATCTTGCCAATTGTAAAAGCATGCTGGAAGCCTTTAAAGCTGGGGGAGATTTTCATTCAAGGACCGCAATGAATATGTATCCTCATATTCGTAAAGCTGTTGAAGAAGGAAGCGTGCTTCTTGAGTGGGATCCTCAACCAGGGGAAGATAAACCTCCAGTTCCCTTGTTGAAGGATGCATTTGGTTCTGAAAGAAGGAAAGCCAAAATGCTTAATTTTTCCATTGCATATGGAAAGACTCCTGTTGGCCTTTCCAAGGATTGGAAGGTTTCTGTGGAGGAAGCAAAGCAGACGGTTGACTTGTGGTATAATGAAAGAAAAGAGGTTCGTACTTGGCAAGATCTTCGAAAGACAGAAGCTGAGAGGAAATCATGTGTTCGCACATTGCTGGGGCGAGCTCGTCGCTTTCCTTCAATGAAGCATGCTACTCGTGCCCAAAAAGGGCATATAGAAAGAGCTGCTATCAATACTCCCGTGCAGGGTAGTGCTGCTGATGTTGCCATGTGTGCCATGTTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTGCAGGTTCATGATGAAGTGATTTTGGAAGGACCGACTGAGTCTGCAGAGGTTGCTAAGGCCATTGTTGTCGAGTGTATGTCGCAACCCTTCAACGGAAAGAACATTCTCAACGTCGACCTTGCCGTGGATGCCAAGTGTGCACAAAACTGGTATTCTGCCAAATAG 4137 43.36 EEAGIYKEIVVVPKDVTHLTMYGDGPTKTVVTSSLNFIDGVQTFKTATFSAIGSDFFAKDMGFVNTVGAAKHQAVALRVQSDRSIFYNCQMDGYQDTLYAHTHRQFYRDCSISGTIDFVFSNLLPLFQSCHFMGDPTYLPFKAVNKAYLGATLEGIFMNPHYRLDLVRGMVGVDGPKLLKTAPSVSHCGGKLGRVAEMMTFGVSTSQASSLRTQWPSYFFLWRSNSVSHSSISICASSKALYRAEFGPLKSVGGASSNMNMFHASIQCRQSSFLTTNSFVETRHYDNERAFLSDVKAWSDRTMRLKQEKHFRFMETEILTKNDEEKLRKKENLIGYGTAHSYNIPCPPYSKVQTNLGSKISYASKDSDCINPPTNMLSDGFRKQEPMNFEQSENVATIDRMISSDRAPLLETIKVSRGECYGDINSDSEGRTMNAGSNDLQNQVVPMQSNKKYTFSQNGKSSITRLAPNVSPNGRKQNFSLGRVNSAPKTLKFTEVANGIRRGVAVEEFPKMTINGSGAKMMEALATDHKPDIKERLNGVYDSVLVVDSVSAAKEVVSMLTTKYRTLVHACDTEVAKIDVKLETPVDHGEIICFSIYSGPKADFGNGKSCIWVDVLDGGGKEILLQFAPFFEDPLIRKMRDYLDYKELIEEFLLHLPFRKKGRFLWQAGMCALLWSSLGERINRVWHNYSFDNHIIENYGIKVSGFHADTMHMARLWDSSRRANGGYSLEALSGDRKVMSGAKLGQEKELIGKVSMKTIFGRKKMKKDGSEGKLIVIPPVEELQREDRKPWVSYSALDSICTLKLYESLKNKLSDMPWERDGEMIPGKTMFNFYEEYWQPFGELLVKMETEGMLVDRPYLAEIEKLAKAEQEVAANRFRNWASKYCPDAKYMNVGSDAQVRQLLFGGTSNSKNPDEFLPTERTFKVPNTEKVTEEGKKTPSKLRNITLHSISVEELSTEKYTATGWPSVSGDALKILAGKVSAEYDDFTDDLQSDNEVDNDSETMPHEENKKRIIRESANMSDYGTAFEAFGSEEKGREACHAIAALCEVCSIDSLISNFILPLQGSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWKVSVEEAKQTVDLWYNERKEVRTWQDLRKTEAERKSCVRTLLGRARRFPSMKHATRAQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVECMSQPFNGKNILNVDLAVDAKCAQNWYSAK 1378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20932881 20947282 - Maker00000141 Lcy6g1408 635852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1408 1378 CDD DNA_pol_A_plastid_like 965 1375 - -
Lcy6g1408 1378 SUPERFAMILY Pectin lyase-like 3 153 IPR011050 -
Lcy6g1408 1378 Pfam 3'-5' exonuclease 681 813 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Lcy6g1408 1378 Gene3D - 1129 1298 - -
Lcy6g1408 1378 FunFam DNA polymerase I 678 849 - -
Lcy6g1408 1378 SUPERFAMILY DNA/RNA polymerases 830 1378 IPR043502 -
Lcy6g1408 1378 PRINTS DNA-polymerase family A (pol I) signature 1321 1334 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Lcy6g1408 1378 PRINTS DNA-polymerase family A (pol I) signature 1075 1097 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Lcy6g1408 1378 PRINTS DNA-polymerase family A (pol I) signature 1291 1307 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Lcy6g1408 1378 PRINTS DNA-polymerase family A (pol I) signature 1098 1113 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Lcy6g1408 1378 PRINTS DNA-polymerase family A (pol I) signature 1120 1143 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Lcy6g1408 1378 PRINTS DNA-polymerase family A (pol I) signature 1150 1163 IPR002298 GO:0003887(InterPro)|GO:0006261(InterPro)
Lcy6g1408 1378 FunFam DNA polymerase I 1129 1298 - -
Lcy6g1408 1378 Pfam Pectinesterase 3 133 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy6g1408 1378 Pfam DNA polymerase family A 1198 1375 IPR001098 GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0006260(InterPro)
Lcy6g1408 1378 Pfam DNA polymerase family A 1042 1165 IPR001098 GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0006260(InterPro)
Lcy6g1408 1378 SUPERFAMILY Ribonuclease H-like 545 818 IPR012337 -
Lcy6g1408 1378 Gene3D - 2 137 IPR012334 -
Lcy6g1408 1378 SMART polaultra3 1108 1338 IPR001098 GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0006260(InterPro)
Lcy6g1408 1378 Gene3D - 546 849 IPR036397 GO:0003676(InterPro)
Lcy6g1408 1378 Gene3D - 1084 1374 - -
Lcy6g1408 1378 PANTHER DNA POLYMERASE I 518 1378 IPR002298 GO:0003887(InterPro)|GO:0003887(PANTHER)|GO:0006261(InterPro)|GO:0006302(PANTHER)
Lcy6g1408 1378 MobiDBLite consensus disorder prediction 991 1010 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1408 Lcy-Chr6:20932881 Lcy7g2042 Lcy-Chr7:48067961 3.18E-42 dispersed
Lcy1g2148 Lcy-Chr1:30505083 Lcy6g1408 Lcy-Chr6:20932881 3.32E-13 wgd
Lcy1g2260 Lcy-Chr1:33872606 Lcy6g1408 Lcy-Chr6:20932881 2.40E-12 wgd
Lcy1g2475 Lcy-Chr1:43296153 Lcy6g1408 Lcy-Chr6:20932881 1.64E-12 wgd
Lcy2g2224 Lcy-Chr2:46148720 Lcy6g1408 Lcy-Chr6:20932881 2.71E-45 wgd
Lcy3g0424 Lcy-Chr3:14143139 Lcy6g1408 Lcy-Chr6:20932881 1.26E-12 wgd
Lcy6g1408 Lcy-Chr6:20932881 Lcy7g1931 Lcy-Chr7:45208352 4.70E-10 wgd
Lcy6g1408 Lcy-Chr6:20932881 Lcy7g1151 Lcy-Chr7:13014271 1.64E-13 wgd
Lcy6g1408 Lcy-Chr6:20932881 Lcy8g0676 Lcy-Chr8:24703067 2.47E-12 wgd
Lcy6g1408 Lcy-Chr6:20932881 Lcy8g0358 Lcy-Chr8:10990330 2.26E-36 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1408 K02335 - csv:101212518 1719.52