Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1411 ATGAATTGCTTTCAATGTTGCATGTCAGAGGAGAAAGCCAGCAGTAGGAAGTCTTTGAAAAAGAGCATTAAGGAGTATCAGGACACCAAAACTTTAGCCTCATTTGCCAACATTTCCTTTAAATCTGGTAGGCTCTCTCCCTTTGCTGCCCCAGATTTTGATCCCCTGCATTCTATACTTTATAGCAGTCGGCGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGGAAAGGAAACATCTCAGCTCAAATATTTACATTTAATGAGCTAAGTACTGCAACGAATAACTTCAACCACGACAATCTGTTGGGGGAAGGCGGTTTTGGAAGGGTTTACAAAGGCATCATTGAAAACACAAAACAAGTAACGGCCGTGAAGCAACTCGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCGAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAAAGGATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTGCTCGATATAGCGTCAGATAAGCCGCCTCTGGACTGGAAGACAAGGATGAAAATTGCTGAAGGAGCAGCAAAAGGACTTGAATACTTACACGAAACCGCCAATCCTCCCGTGATATACCGCGATTTCAAAGCTTCAAACATATTGTTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGAGATAAATCTCATGTTTCCACTAGAGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAATTGACGACGAAATCAGATGTCTACAGTTTCGGCGTCGTGTTTCTGGAGATAATAACAGGAAGAAGAGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCTCAACCACTTTTCAAAGACAGAAGGAAATTTACACTAATGGCAGATCCAAAGCTAGAAGGAAACTACCCAGTGAAGGCTCTATATCAAGCTCTAGCAGTGGCAGCCATGTGTTTACAGGAGGAAGCAAATACACGGCCATTGATCAGCGATGTGGTTACGGCTCTTGAATACTTAGCAGCAAACAAAGATATCGAGGGAGACGAAGATGACGAATCAGATTCGGGATCGGTACCGGGATCGGGATCGGGATCGGGTTCAGGTTCGGCTTCTCCGGATAGAAGTAGTAAGGATGGAGATAAAAATGTTGATGTTGAGAGTGATGGGAGATGA 1278 42.88 MNCFQCCMSEEKASSRKSLKKSIKEYQDTKTLASFANISFKSGRLSPFAAPDFDPLHSILYSSRRRYITEEIKKLGKGNISAQIFTFNELSTATNNFNHDNLLGEGGFGRVYKGIIENTKQVTAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEANTRPLISDVVTALEYLAANKDIEGDEDDESDSGSVPGSGSGSGSGSASPDRSSKDGDKNVDVESDGR 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20994050 20997431 - Maker00000066 Lcy6g1411 635855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1411 425 MobiDBLite consensus disorder prediction 379 425 - -
Lcy6g1411 425 SUPERFAMILY Protein kinase-like (PK-like) 81 369 IPR011009 -
Lcy6g1411 425 PANTHER OS07G0668900 PROTEIN 46 384 - -
Lcy6g1411 425 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1411 425 CDD STKc_IRAK 103 372 - -
Lcy6g1411 425 MobiDBLite consensus disorder prediction 391 408 - -
Lcy6g1411 425 MobiDBLite consensus disorder prediction 409 425 - -
Lcy6g1411 425 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524(InterPro)
Lcy6g1411 425 FunFam Serine/threonine-protein kinase PBS1 174 389 - -
Lcy6g1411 425 FunFam Serine/threonine-protein kinase CDL1-like 68 173 - -
Lcy6g1411 425 Pfam Protein kinase domain 99 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1411 425 Gene3D Phosphorylase Kinase; domain 1 81 173 - -
Lcy6g1411 425 Gene3D Transferase(Phosphotransferase) domain 1 174 393 - -
Lcy6g1411 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0696 Lcy-Chr4:8389341 Lcy6g1411 Lcy-Chr6:20994050 4.25E-104 dispersed
Lcy5g0251 Lcy-Chr5:2372887 Lcy6g1411 Lcy-Chr6:20994050 2.56E-162 dispersed
Lcy6g1411 Lcy-Chr6:20994050 Lcy9g0711 Lcy-Chr9:24217776 1.03E-228 dispersed
Lcy8g1105 Lcy-Chr8:37163932 Lcy6g1411 Lcy-Chr6:20994050 7.16E-82 dispersed
Lcy8g1625 Lcy-Chr8:42832368 Lcy6g1411 Lcy-Chr6:20994050 3.83E-80 dispersed
Lcy9g1271 Lcy-Chr9:37310086 Lcy6g1411 Lcy-Chr6:20994050 1.87E-73 dispersed
Lcy9g2308 Lcy-Chr9:47473467 Lcy6g1411 Lcy-Chr6:20994050 8.91E-43 dispersed
Lcy7g0150 Lcy-Chr7:1361085 Lcy6g1411 Lcy-Chr6:20994050 7.49E-63 transposed
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1411 Lcy-Chr6:20994050 1.08E-80 wgd
Lcy1g2646 Lcy-Chr1:49901113 Lcy6g1411 Lcy-Chr6:20994050 8.75E-70 wgd
Lcy11g0875 Lcy-Chr11:25989704 Lcy6g1411 Lcy-Chr6:20994050 3.48E-69 wgd
Lcy12g0901 Lcy-Chr12:13013602 Lcy6g1411 Lcy-Chr6:20994050 9.64E-79 wgd
Lcy13g0883 Lcy-Chr13:15333608 Lcy6g1411 Lcy-Chr6:20994050 1.35E-69 wgd
Lcy2g2014 Lcy-Chr2:38132784 Lcy6g1411 Lcy-Chr6:20994050 1.76E-94 wgd
Lcy2g1571 Lcy-Chr2:21454477 Lcy6g1411 Lcy-Chr6:20994050 4.51E-136 wgd
Lcy3g0263 Lcy-Chr3:8579932 Lcy6g1411 Lcy-Chr6:20994050 1.57E-70 wgd
Lcy5g1291 Lcy-Chr5:30557563 Lcy6g1411 Lcy-Chr6:20994050 2.06E-68 wgd
Lcy6g1411 Lcy-Chr6:20994050 Lcy8g0035 Lcy-Chr8:1072637 2.92E-58 wgd
Lcy6g1411 Lcy-Chr6:20994050 Lcy9g0416 Lcy-Chr9:11658724 3.54E-75 wgd
Lcy6g1411 Lcy-Chr6:20994050 Lcy9g0626 Lcy-Chr9:20737737 2.20E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66041 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1411 - - - 0.0