Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1447 ATGACCCATTTTCTTGAACCCAAATTCCACCAAACCCCATTCCCATTTCTCCGCCGCAGCCCCAAATCTCCACCGCCCATTTCAATCCGATGCGGCGGCGCTGCCCGTGAGCTCCGATCCCGATTAGACTCCATTAAAAACACCCAAAAGCTCACCGAAGCCATGAAGCTCGTCGCCGCCGCCAAGGTCCGGCGAGCCCAAGAAGCCGTGATCAACAGCCGCCCCTTCTCCCAATCCCTCGCCCAATTTCTACATTTCATCACCCAACAGATCCAACGAGACGACATAGATTTCCCCTTTCTAAACCTCAGACCCGTCAGAAAGGTCGCCGTCGTCGTATTCACCGGCGACCGAGGCCTCTGTGGGGGGTTCAACTCTTCGGTGATCCGAAAGGCCGAGACCCGATTGGCCGAATTGAAAGATCTCGATCTCGGTCACACCCTAATCAGCGTCGGCAAAAAAGGCAACTCGCATTTCCGCCGCCAGCCCGATGTTCAAGTCGATCGGTTCATCAGCGGCTGCGGCGGCGGTTCGTTACCCACTGCAAAAGAAGCTCAAGCCATTGCAGACATCGTGTTTTCTCTGTTCATCAGCGAAGAAGTCGACAAAGTGGAACTGATTTACACGAAATTCGTTTCGTTGCTGAAATCCGAGCCTGTGGTTGAGGCTTTGCTGCCATTGACGGGTGAAGAGGAAGCCATGGGAGATGGGGGGTTCAGATTGACGACAAAGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAGAGTGGGGAATTTGGGGGAAATTTCGCCATTGTTGGAGTTTGAGCAAGACCCAGTTCAAATTTTGGATGGGATGATGGCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAGGTTGCGGCGAGGATGAATGCCATGACTAACGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTCTGGAGATTGTTGCTGGAACTGTTGCTCTTGAGAGATTTTGA 1053 51.95 MTHFLEPKFHQTPFPFLRRSPKSPPPISIRCGGAARELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFITQQIQRDDIDFPFLNLRPVRKVAVVVFTGDRGLCGGFNSSVIRKAETRLAELKDLDLGHTLISVGKKGNSHFRRQPDVQVDRFISGCGGGSLPTAKEAQAIADIVFSLFISEEVDKVELIYTKFVSLLKSEPVVEALLPLTGEEEAMGDGGFRLTTKEGKLKVEREGRVGNLGEISPLLEFEQDPVQILDGMMALYLNSQILRALQESMASEVAARMNAMTNASENAMELKKSVSVAYNRERQAKITGEILEIVAGTVALERF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 21735803 21736855 + Maker00000073 Lcy6g1447 635891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1447 350 FunFam ATP synthase gamma chain, chloroplastic 33 100 - -
Lcy6g1447 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 FunFam ATP synthase gamma chain, chloroplastic 244 347 - -
Lcy6g1447 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 FunFam ATP synthase gamma chain 99 228 - -
Lcy6g1447 350 NCBIfam ATP synthase F1 subunit gamma 35 347 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 CDD F1-ATPase_gamma 36 343 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Lcy6g1447 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 252 347 - -
Lcy6g1447 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 98 - -
Lcy6g1447 350 Gene3D - 99 228 - -
Lcy6g1447 350 PANTHER ATP SYNTHASE GAMMA CHAIN 29 346 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(PANTHER)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g2026 Lcy-Chr5:43270257 Lcy6g1447 Lcy-Chr6:21735803 6.28E-133 dispersed
Lcy5g2495 Lcy-Chr5:47746459 Lcy6g1447 Lcy-Chr6:21735803 2.50E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1447 K02115 - csv:101214682 587.415