Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g1452 | ATGCGAATTACCTCAATAGCCATACAACTCAAATTCATCGTGGCCGTTCATATTCTCAACAACACTCCATCCCCACCGTCCATTCTCTCCACCGTTCGCACCAAACACCACTCTATATATACTGCACTGAGCCACTCCGTTCTCTTCACGCTTTCTATTCGCATTCTGGTTCGTCTTCGCCTTCGCCTTCAGCTTTTGGGTGCCTTCAGTTACCACCAAGCAAATTACATGGTTGATCTAGACGTCCAGATTCCAACTGCTTTTGATCCCTTTGCCGACGCCAAGGACTCGGATGCCCCAGGAAGCAAAGAGTACGTCCATATAAGGGTCCAACAGAGGAATGGGAAGAAGTGTCTGACAACAGTTCAAGGGCTTAAGAAGGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTTCAGGACAAAGAGCTGGGGAAGATAATCCAACTCCAAGGCGATCAGCGCAAGAACGTTTCTCATTTCCTCGTTCAGGCCGGCCTCGTTAAGAAGGATCAAATCAAGATACATGTTTGCTTTCTTGTGACTGAAAGGATATTTTCAGGCATTGATGTTATTAAATCTGATGCGTTCGAAGATGATTCAAAGTTGTACCAGGCTGAATCGGGGCGACCCATGGGCACCAGGGACCAAACGGAGGGGAGAAAACTCGGCCCGCACAATATGGTCGGGCTTGGCCTCGGCCTCGACCATAGGAGAGTATGCCTCGGTCTTCAACGGATTTCTAGAAGGGGTCCATCATCGTATTTGCCTTGGTTATCTTTGGTCGGCCTCGACCTTAGCGATGAACTCCTTCAGATGCCTATTCCTAATCAGTGCTTCAATTTCATCATTCAGTTGAATGCAGTTTCTGGTTGA | 906 | 47.57 | MRITSIAIQLKFIVAVHILNNTPSPPSILSTVRTKHHSIYTALSHSVLFTLSIRILVRLRLRLQLLGAFSYHQANYMVDLDVQIPTAFDPFADAKDSDAPGSKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVKKDQIKIHVCFLVTERIFSGIDVIKSDAFEDDSKLYQAESGRPMGTRDQTEGRKLGPHNMVGLGLGLDHRRVCLGLQRISRRGPSSYLPWLSLVGLDLSDELLQMPIPNQCFNFIIQLNAVSG | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 21944957 | 21951185 | + | Maker00000198 | Lcy6g1452 | 635896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g1452 | 301 | NCBIfam | translation initiation factor SUI1 | 81 | 186 | IPR005874 | GO:0003743(InterPro) | |
Lcy6g1452 | 301 | Gene3D | - | 67 | 187 | - | - | |
Lcy6g1452 | 301 | FunFam | Eukaryotic translation initiation factor SUI1 | 78 | 188 | - | - | |
Lcy6g1452 | 301 | Pfam | Translation initiation factor SUI1 | 103 | 177 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy6g1452 | 301 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 | 77 | 187 | - | GO:0003723(PANTHER) | |
Lcy6g1452 | 301 | ProSiteProfiles | Translation initiation factor SUI1 family profile. | 106 | 176 | IPR001950 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Lcy6g1452 | 301 | CDD | eIF1_SUI1 | 104 | 186 | IPR005874 | GO:0003743(InterPro) | |
Lcy6g1452 | 301 | SUPERFAMILY | eIF1-like | 75 | 186 | IPR036877 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g1452 | Lcy-Chr6:21944957 | Lcy9g1188 | Lcy-Chr9:36284207 | 2.48E-67 | dispersed | |
Lcy6g1452 | Lcy-Chr6:21944957 | Lcy11g0139 | Lcy-Chr11:1473233 | 8.40E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g1452 | K03113 | - | csv:101214921 | 219.935 |