Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1452 ATGCGAATTACCTCAATAGCCATACAACTCAAATTCATCGTGGCCGTTCATATTCTCAACAACACTCCATCCCCACCGTCCATTCTCTCCACCGTTCGCACCAAACACCACTCTATATATACTGCACTGAGCCACTCCGTTCTCTTCACGCTTTCTATTCGCATTCTGGTTCGTCTTCGCCTTCGCCTTCAGCTTTTGGGTGCCTTCAGTTACCACCAAGCAAATTACATGGTTGATCTAGACGTCCAGATTCCAACTGCTTTTGATCCCTTTGCCGACGCCAAGGACTCGGATGCCCCAGGAAGCAAAGAGTACGTCCATATAAGGGTCCAACAGAGGAATGGGAAGAAGTGTCTGACAACAGTTCAAGGGCTTAAGAAGGAGTTCAGCTATGATAAGATCCTCAAGGACCTGAAGAAGGACTTCTGTTGCAATGGGAATGTTGTTCAGGACAAAGAGCTGGGGAAGATAATCCAACTCCAAGGCGATCAGCGCAAGAACGTTTCTCATTTCCTCGTTCAGGCCGGCCTCGTTAAGAAGGATCAAATCAAGATACATGTTTGCTTTCTTGTGACTGAAAGGATATTTTCAGGCATTGATGTTATTAAATCTGATGCGTTCGAAGATGATTCAAAGTTGTACCAGGCTGAATCGGGGCGACCCATGGGCACCAGGGACCAAACGGAGGGGAGAAAACTCGGCCCGCACAATATGGTCGGGCTTGGCCTCGGCCTCGACCATAGGAGAGTATGCCTCGGTCTTCAACGGATTTCTAGAAGGGGTCCATCATCGTATTTGCCTTGGTTATCTTTGGTCGGCCTCGACCTTAGCGATGAACTCCTTCAGATGCCTATTCCTAATCAGTGCTTCAATTTCATCATTCAGTTGAATGCAGTTTCTGGTTGA 906 47.57 MRITSIAIQLKFIVAVHILNNTPSPPSILSTVRTKHHSIYTALSHSVLFTLSIRILVRLRLRLQLLGAFSYHQANYMVDLDVQIPTAFDPFADAKDSDAPGSKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVKKDQIKIHVCFLVTERIFSGIDVIKSDAFEDDSKLYQAESGRPMGTRDQTEGRKLGPHNMVGLGLGLDHRRVCLGLQRISRRGPSSYLPWLSLVGLDLSDELLQMPIPNQCFNFIIQLNAVSG 301
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 21944957 21951185 + Maker00000198 Lcy6g1452 635896
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1452 301 NCBIfam translation initiation factor SUI1 81 186 IPR005874 GO:0003743(InterPro)
Lcy6g1452 301 Gene3D - 67 187 - -
Lcy6g1452 301 FunFam Eukaryotic translation initiation factor SUI1 78 188 - -
Lcy6g1452 301 Pfam Translation initiation factor SUI1 103 177 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy6g1452 301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 77 187 - GO:0003723(PANTHER)
Lcy6g1452 301 ProSiteProfiles Translation initiation factor SUI1 family profile. 106 176 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Lcy6g1452 301 CDD eIF1_SUI1 104 186 IPR005874 GO:0003743(InterPro)
Lcy6g1452 301 SUPERFAMILY eIF1-like 75 186 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1452 Lcy-Chr6:21944957 Lcy9g1188 Lcy-Chr9:36284207 2.48E-67 dispersed
Lcy6g1452 Lcy-Chr6:21944957 Lcy11g0139 Lcy-Chr11:1473233 8.40E-09 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1452 K03113 - csv:101214921 219.935