Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1462 ATGTCTCGAAGATCGTCTAGGTTAGTCGAAAAAGCTAAGGAATATTTAGAGAAAACCACAATTAGTGAAACTGCAAAATCATCTAGAACTAAGAGATGTGGTGTATCGGGGGGAAGCCATAAATCTTCTAGACGAAATCAGAAGTTGAAGCAGAATAATGTGATGAAGTTGAATGAAGTTCGGTCCGAGCAATTAGAAGGGAAGAAGAGAAAGACTTGTTGTAAGAGTTCAGTGGTCACAAGAGCAGCTGCTTCAAAGAATTTCGGGTTTGAAGGGATCAAAAAAGGGGGTGGGAGATCAATGAAGAGGGTGTATTATCCAAAAGTGGTTTTTGATGGAGGTGAATTTGAGGTTGGTGACGATGTCTATGTGAAGAGGAGAGAAGATGCAAGTTCCGACGATGAAGATCCTGAAGTTGAGGAGTGCAAAGTGTGCTTTAAGTCTGGAGAGGCTATAATGATTGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGGATTGTTTGAAGCCGCCTATGAAGGAGGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAAGAGGTTCAGTTGTCAAATCCTCCAGAAGGTAAAAAACGGGTTAGGACAATGAGGGAGAGGCTTCTGGCGGGTGACTTGTGGGCTGCTCACATTGAAAGGTTATGGAAAGAAGCAAATGGTAACTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAATGGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATCTAACTAATGACTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGGATCCTAAAGACTATCATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAGTATGACATTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAGGATGGTGAAGATAGTGACAGAGACTGGAAGTTGGACCAAAATGCAGACTTTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCACAAATTTCACAATCTCGAATCTGCTCAAGCACAACCCATGAATTGGCTGCGAATTCAAGGGAAGGACGATTTCATGGACTACAAAAGATAGGAGCAAAGAAGATCCCAGAGCTTATAAGATGCCACAAACAGACTGAACTGGAAAGAGCAAAGGCAACCCTTATGTTGGCATCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATCGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGACATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGCTGTAAAGAATTGTCAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACACTATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGACCTTCCTGAGAAGTTGCTTCCTCGGATTTCAAGCCGAATGGGTATCAAAAAGCTTTGTTTTGGCCCCTATAACCATCAACAACTTCAAGAAATCATTTTGAGTCGCCTCGAAGGAATTGACGCATTTGAAAAACAAGCTATTGAATTTGCATCAAGAAAGGTTGCTGCTATTTCAGGAGACGCACGTCGTGCTCTGGGGATATGTATGTGTGCAGCTGAAATTAAGGATTATCATATAAAGAAGCTGTGTTTGACTTCCAACAACGATATGAAAGCAAAAACACGTGTAGGAATAGCAGAGGTGGAAGCAGCAATTCAAGAAATGTTGCAAGCACCTCATATTCAAGTGATGAAGAGCTGTTCTAAGCAGAGTAAGATCTTCTTGACAGCTATGGTGTACGAACTTTATAAAACTGGAATGGGTGAAACAACCTTTGAGAAGGTTGCCATGACTGTCTTGCATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCACTCTTCAGAGTTGGTTGTTGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGAGGCTAAACACCGATTTCAGAAGTTACAACTTAATTTTCCAAGTGACGACGTCTCATTTGCACTGAAAGGCAGTAAGGATCTAACTTGGTTGGCTAAGTATCTATGA 2373 40.88 MSRRSSRLVEKAKEYLEKTTISETAKSSRTKRCGVSGGSHKSSRRNQKLKQNNVMKLNEVRSEQLEGKKRKTCCKSSVVTRAAASKNFGFEGIKKGGGRSMKRVYYPKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECKVCFKSGEAIMIECDDCLGGFHLDCLKPPMKEVPEGDWICGFCEATKMGKEVQLSNPPEGKKRVRTMRERLLAGDLWAAHIERLWKEANGNYQCKVRWYIIPEETAMGRQSHNLKRELYLTNDYADIEMESLLRLCQVMDPKDYHNAKEGDDIFLCEYEYDIRWHSFKRLAEIDKEDGEDSDRDWKLDQNADFDSDGDVEYEEERAQISQSRICSSTTHELAANSREGRFHGLQKIGAKKIPELIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGHIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSAVKNCQEDDRPCILLIDELDLLVTRNQSVLYTILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIKKLCFGPYNHQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALGICMCAAEIKDYHIKKLCLTSNNDMKAKTRVGIAEVEAAIQEMLQAPHIQVMKSCSKQSKIFLTAMVYELYKTGMGETTFEKVAMTVLHLCTSNGEEFPGYDALFRVGCWLGECRIILCESEAKHRFQKLQLNFPSDDVSFALKGSKDLTWLAKYL 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 22415358 22432960 - Maker00000059 Lcy6g1462 635906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1462 790 ProSiteProfiles BAH domain profile. 186 313 IPR001025 GO:0003682(InterPro)
Lcy6g1462 790 FunFam Origin recognition complex subunit 1 137 204 - -
Lcy6g1462 790 Gene3D - 85 328 IPR043151 -
Lcy6g1462 790 ProSiteProfiles Zinc finger PHD-type profile. 139 188 IPR019787 -
Lcy6g1462 790 Pfam PHD-finger 142 185 IPR019787 -
Lcy6g1462 790 Gene3D - 586 678 - -
Lcy6g1462 790 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 191 786 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Lcy6g1462 790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 208 IPR013083 -
Lcy6g1462 790 Pfam BAH domain 222 311 IPR001025 GO:0003682(InterPro)
Lcy6g1462 790 MobiDBLite consensus disorder prediction 20 50 - -
Lcy6g1462 790 ProSitePatterns Zinc finger PHD-type signature. 142 185 IPR019786 -
Lcy6g1462 790 Pfam ATPase family associated with various cellular activities (AAA) 440 583 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lcy6g1462 790 SMART PHD_3 141 186 IPR001965 -
Lcy6g1462 790 SUPERFAMILY FYVE/PHD zinc finger 128 190 IPR011011 -
Lcy6g1462 790 SMART BAH_4 173 313 IPR001025 GO:0003682(InterPro)
Lcy6g1462 790 Pfam AAA lid domain 612 647 IPR041083 -
Lcy6g1462 790 FunFam Origin recognition complex subunit 1 392 590 - -
Lcy6g1462 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 405 647 IPR027417 -
Lcy6g1462 790 SMART AAA_5 435 588 IPR003593 GO:0016887(InterPro)
Lcy6g1462 790 MobiDBLite consensus disorder prediction 21 50 - -
Lcy6g1462 790 FunFam Origin recognition complex subunit 1 587 679 - -
Lcy6g1462 790 Pfam CDC6, C terminal winged helix domain 685 776 IPR015163 -
Lcy6g1462 790 Gene3D - 391 585 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0308 Lcy-Chr11:5002133 Lcy6g1462 Lcy-Chr6:22415358 0 dispersed
Lcy11g0309 Lcy-Chr11:5014893 Lcy6g1462 Lcy-Chr6:22415358 3.36E-175 dispersed
Lcy6g1462 Lcy-Chr6:22415358 Lcy8g1760 Lcy-Chr8:44086543 5.54E-32 dispersed
Lcy6g1462 Lcy-Chr6:22415358 Lcy13g0853 Lcy-Chr13:14800366 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20310 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1462 K02603 - csv:101214082 1294.64