Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g1462 | ATGTCTCGAAGATCGTCTAGGTTAGTCGAAAAAGCTAAGGAATATTTAGAGAAAACCACAATTAGTGAAACTGCAAAATCATCTAGAACTAAGAGATGTGGTGTATCGGGGGGAAGCCATAAATCTTCTAGACGAAATCAGAAGTTGAAGCAGAATAATGTGATGAAGTTGAATGAAGTTCGGTCCGAGCAATTAGAAGGGAAGAAGAGAAAGACTTGTTGTAAGAGTTCAGTGGTCACAAGAGCAGCTGCTTCAAAGAATTTCGGGTTTGAAGGGATCAAAAAAGGGGGTGGGAGATCAATGAAGAGGGTGTATTATCCAAAAGTGGTTTTTGATGGAGGTGAATTTGAGGTTGGTGACGATGTCTATGTGAAGAGGAGAGAAGATGCAAGTTCCGACGATGAAGATCCTGAAGTTGAGGAGTGCAAAGTGTGCTTTAAGTCTGGAGAGGCTATAATGATTGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGGATTGTTTGAAGCCGCCTATGAAGGAGGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAAGAGGTTCAGTTGTCAAATCCTCCAGAAGGTAAAAAACGGGTTAGGACAATGAGGGAGAGGCTTCTGGCGGGTGACTTGTGGGCTGCTCACATTGAAAGGTTATGGAAAGAAGCAAATGGTAACTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAATGGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATCTAACTAATGACTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGGATCCTAAAGACTATCATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAGTATGACATTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAGGATGGTGAAGATAGTGACAGAGACTGGAAGTTGGACCAAAATGCAGACTTTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCACAAATTTCACAATCTCGAATCTGCTCAAGCACAACCCATGAATTGGCTGCGAATTCAAGGGAAGGACGATTTCATGGACTACAAAAGATAGGAGCAAAGAAGATCCCAGAGCTTATAAGATGCCACAAACAGACTGAACTGGAAAGAGCAAAGGCAACCCTTATGTTGGCATCATTACCCAAGTCTCTACCTTGTAGGAATAAAGAAATCGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGACATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGCTGTAAAGAATTGTCAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACACTATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGACCTTCCTGAGAAGTTGCTTCCTCGGATTTCAAGCCGAATGGGTATCAAAAAGCTTTGTTTTGGCCCCTATAACCATCAACAACTTCAAGAAATCATTTTGAGTCGCCTCGAAGGAATTGACGCATTTGAAAAACAAGCTATTGAATTTGCATCAAGAAAGGTTGCTGCTATTTCAGGAGACGCACGTCGTGCTCTGGGGATATGTATGTGTGCAGCTGAAATTAAGGATTATCATATAAAGAAGCTGTGTTTGACTTCCAACAACGATATGAAAGCAAAAACACGTGTAGGAATAGCAGAGGTGGAAGCAGCAATTCAAGAAATGTTGCAAGCACCTCATATTCAAGTGATGAAGAGCTGTTCTAAGCAGAGTAAGATCTTCTTGACAGCTATGGTGTACGAACTTTATAAAACTGGAATGGGTGAAACAACCTTTGAGAAGGTTGCCATGACTGTCTTGCATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGATATGATGCACTCTTCAGAGTTGGTTGTTGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGAGGCTAAACACCGATTTCAGAAGTTACAACTTAATTTTCCAAGTGACGACGTCTCATTTGCACTGAAAGGCAGTAAGGATCTAACTTGGTTGGCTAAGTATCTATGA | 2373 | 40.88 | MSRRSSRLVEKAKEYLEKTTISETAKSSRTKRCGVSGGSHKSSRRNQKLKQNNVMKLNEVRSEQLEGKKRKTCCKSSVVTRAAASKNFGFEGIKKGGGRSMKRVYYPKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECKVCFKSGEAIMIECDDCLGGFHLDCLKPPMKEVPEGDWICGFCEATKMGKEVQLSNPPEGKKRVRTMRERLLAGDLWAAHIERLWKEANGNYQCKVRWYIIPEETAMGRQSHNLKRELYLTNDYADIEMESLLRLCQVMDPKDYHNAKEGDDIFLCEYEYDIRWHSFKRLAEIDKEDGEDSDRDWKLDQNADFDSDGDVEYEEERAQISQSRICSSTTHELAANSREGRFHGLQKIGAKKIPELIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGHIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSAVKNCQEDDRPCILLIDELDLLVTRNQSVLYTILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIKKLCFGPYNHQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALGICMCAAEIKDYHIKKLCLTSNNDMKAKTRVGIAEVEAAIQEMLQAPHIQVMKSCSKQSKIFLTAMVYELYKTGMGETTFEKVAMTVLHLCTSNGEEFPGYDALFRVGCWLGECRIILCESEAKHRFQKLQLNFPSDDVSFALKGSKDLTWLAKYL | 790 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 22415358 | 22432960 | - | Maker00000059 | Lcy6g1462 | 635906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g1462 | 790 | ProSiteProfiles | BAH domain profile. | 186 | 313 | IPR001025 | GO:0003682(InterPro) | |
Lcy6g1462 | 790 | FunFam | Origin recognition complex subunit 1 | 137 | 204 | - | - | |
Lcy6g1462 | 790 | Gene3D | - | 85 | 328 | IPR043151 | - | |
Lcy6g1462 | 790 | ProSiteProfiles | Zinc finger PHD-type profile. | 139 | 188 | IPR019787 | - | |
Lcy6g1462 | 790 | Pfam | PHD-finger | 142 | 185 | IPR019787 | - | |
Lcy6g1462 | 790 | Gene3D | - | 586 | 678 | - | - | |
Lcy6g1462 | 790 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 191 | 786 | IPR050311 | GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER) | |
Lcy6g1462 | 790 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 208 | IPR013083 | - | |
Lcy6g1462 | 790 | Pfam | BAH domain | 222 | 311 | IPR001025 | GO:0003682(InterPro) | |
Lcy6g1462 | 790 | MobiDBLite | consensus disorder prediction | 20 | 50 | - | - | |
Lcy6g1462 | 790 | ProSitePatterns | Zinc finger PHD-type signature. | 142 | 185 | IPR019786 | - | |
Lcy6g1462 | 790 | Pfam | ATPase family associated with various cellular activities (AAA) | 440 | 583 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lcy6g1462 | 790 | SMART | PHD_3 | 141 | 186 | IPR001965 | - | |
Lcy6g1462 | 790 | SUPERFAMILY | FYVE/PHD zinc finger | 128 | 190 | IPR011011 | - | |
Lcy6g1462 | 790 | SMART | BAH_4 | 173 | 313 | IPR001025 | GO:0003682(InterPro) | |
Lcy6g1462 | 790 | Pfam | AAA lid domain | 612 | 647 | IPR041083 | - | |
Lcy6g1462 | 790 | FunFam | Origin recognition complex subunit 1 | 392 | 590 | - | - | |
Lcy6g1462 | 790 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 405 | 647 | IPR027417 | - | |
Lcy6g1462 | 790 | SMART | AAA_5 | 435 | 588 | IPR003593 | GO:0016887(InterPro) | |
Lcy6g1462 | 790 | MobiDBLite | consensus disorder prediction | 21 | 50 | - | - | |
Lcy6g1462 | 790 | FunFam | Origin recognition complex subunit 1 | 587 | 679 | - | - | |
Lcy6g1462 | 790 | Pfam | CDC6, C terminal winged helix domain | 685 | 776 | IPR015163 | - | |
Lcy6g1462 | 790 | Gene3D | - | 391 | 585 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g0308 | Lcy-Chr11:5002133 | Lcy6g1462 | Lcy-Chr6:22415358 | 0 | dispersed | |
Lcy11g0309 | Lcy-Chr11:5014893 | Lcy6g1462 | Lcy-Chr6:22415358 | 3.36E-175 | dispersed | |
Lcy6g1462 | Lcy-Chr6:22415358 | Lcy8g1760 | Lcy-Chr8:44086543 | 5.54E-32 | dispersed | |
Lcy6g1462 | Lcy-Chr6:22415358 | Lcy13g0853 | Lcy-Chr13:14800366 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20310 | None | None | None | None | Lcy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g1462 | K02603 | - | csv:101214082 | 1294.64 |