Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1578 ATGAGGAGAGGGAGAGGAACGGCGGCGGCGGTGGAGACGGCGGCGCGTGAGGCTGCACCAACCGGATCGGAGCGGAGATACAGAGGAGTTCGTAAAAGGCCATGGGGGAGATTCGCGGCGGAGATCAGAGACCCTTGGAAGAAGACCAGAGTTTGGCTTGGCACCTTCGACTCCGCCGAGGACGCCGCCCGTGCTTACGACTTCGCCGCCAGAAAACTCCGCGGCCCCAAAGCCAAAACCAATTTCCCCCTCCCCAATCCGACGTCGTTTTTCGACTACCCCCCTTACCCTCACACCGTCAACGCTCCAGATCCCTTCCCCGATCACCGATTCGAGATTAATCCACAGAGACCCACTTCCAGTAGCCACAGCTCCACCGTCGAGTCCTTCAGCGGGCCCCGCCCGCCCTCTGCCGCCGCGCCCATGGCCGTCGCTACTAGCACTTCCGCCTCCCGCCGATTCTCTCGCAGGCCGCCGCTCGTCCCTGAGGATTGCCATAGCGACTGCGATTCCTCGTCCTCAGTCATCGACGACGGCGACATCGCTTCCTCGTCGATGATTCGTCGGAAACCCCCTCTGCCCTTCGATCTTAACATTCCGCCGTCGGATCATCTTGATTTTTCCGCCGATGATCTTCGATGTACTGCCCTCTGCCTCTGA 660 61.21 MRRGRGTAAAVETAAREAAPTGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDFAARKLRGPKAKTNFPLPNPTSFFDYPPYPHTVNAPDPFPDHRFEINPQRPTSSSHSSTVESFSGPRPPSAAAPMAVATSTSASRRFSRRPPLVPEDCHSDCDSSSSVIDDGDIASSSMIRRKPPLPFDLNIPPSDHLDFSADDLRCTALCL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26854069 26854728 + Maker00030351 Lcy6g1578 636022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1578 219 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1578 219 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1578 219 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1578 219 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1578 219 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1578 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 178 - -
Lcy6g1578 219 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Lcy6g1578 219 CDD AP2 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy6g1578 219 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Lcy6g1578 219 MobiDBLite consensus disorder prediction 1 29 - -
Lcy6g1578 219 MobiDBLite consensus disorder prediction 101 191 - -
Lcy6g1578 219 MobiDBLite consensus disorder prediction 114 132 - -
Lcy6g1578 219 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0733 Lcy-Chr4:8871295 Lcy6g1578 Lcy-Chr6:26854069 2.52E-64 dispersed
Lcy5g1860 Lcy-Chr5:41458720 Lcy6g1578 Lcy-Chr6:26854069 3.22E-27 dispersed
Lcy6g1578 Lcy-Chr6:26854069 Lcy8g1597 Lcy-Chr8:42591582 1.36E-63 dispersed
Lcy12g1412 Lcy-Chr12:31757001 Lcy6g1578 Lcy-Chr6:26854069 3.08E-23 wgd
Lcy13g0911 Lcy-Chr13:16594295 Lcy6g1578 Lcy-Chr6:26854069 4.12E-14 wgd
Lcy2g2266 Lcy-Chr2:47136549 Lcy6g1578 Lcy-Chr6:26854069 4.82E-21 wgd
Lcy5g0745 Lcy-Chr5:10704687 Lcy6g1578 Lcy-Chr6:26854069 2.50E-19 wgd
Lcy6g1578 Lcy-Chr6:26854069 Lcy8g0282 Lcy-Chr8:8538838 2.88E-23 wgd
Lcy6g1578 Lcy-Chr6:26854069 Lcy8g0777 Lcy-Chr8:28496511 3.08E-06 wgd
Lcy6g1578 Lcy-Chr6:26854069 Lcy9g0587 Lcy-Chr9:19221192 2.34E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20313 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1578 K09286 - csv:101219993 274.633