Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1627 ATGGGGAGGAACTTGAAAGATGTTGAAGCATATGAATGGGCAAGTCTTACCTCGATTCTCGATCCCATTGTTCTCACTCAATCAGAGGATGAATGGAATTGGCCTCTCAATCCCAATGGACAGTTCTCTGTGAGATCTCTTCTAGCTAATATGGAAGATAGACCATGGCTAATCGATCCCTCTCTTTCCAAAGCCATATGGAAGGACAATTACCCAAAGAAAATAAAATTCTTCTTATGGGAACTTGCTCACAAGGCCATTAGTACCAAAGAGGTTCTCCAGAGACGCATGCCCTTTGCAGCTCTATCTCCCGGCTGGTGTTCTCTCTGCAAAGCTGAAGATGAATCTCAGGATCACATTTTTATCCACTGTCCATTTGCTCAACATTTCTGGTACAAAATTTTCAGCTCTTTTGGATGGTATTTGGCTTCTCCTGGGAATATCAAAGACTACCTATGCACTATTTTTCTGGGGCATCCTTTCAAGAACAAGAAATCCATTCTATGGCTGAATATATCTAGGGCTTTTTTTTGGATTCTTTGGAAAGAGCGGAACAATAGAGTATTTCAAAATATAGCAAGCTCCTTTGATTCGTTCTTTGATTTAGTTATCTATTATGCTATCTCTTGGTATCTGAAGGGTCAAAATCTGCCCATTGGTTCATTTACATTAAAGCAAATCACAACTGCAACTAATAACTTTGACCCTTCCAATAAGATAGGAGAAGGTGGTTTTGGACCTGTTTATAAGGGTATTCTTTTGGATGGTACAATGGTTGCAGTGAAGCAACTTTCTACAAAATCAAACCAAGGAAATCGCGAATTTGTGAATGAGATAGGCTTGATATCTTCTTTGAATCACCCACATCTAGTTAAGCTTTATGGATGTTGTATCGAGGCAGATCAACTTTTGCTAGTATATGAATATATGGAAAATAATAGCCTTGCTCAAGCCCTCTTCGCCAAAGGCTTGGCTTTTCTTCACGAGGGGTCAAGATTGAAGATAGTTCACCGAGACATCAAAGGTTCTAATGTATTGTTAGATAAAAATCTCAACCCAAAAATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAATACTCACATAAACACTCGAATTGCCGGAACATTTGGATATATGGCACCAGAATATGCAACACGAGGCTACTTAACCGATAAAGCTGATGTTTATAGCTTTGGCATTGTGGCATTAGAAATAGTTAGTGGAAGGAGCAACACTATTTACCGGGAAAGGATAAGCACTTGTATTGAAAGAAAGAGGAAGTTTAATGGAGCTAGTGGATCCAAAGTTGGGCTCGAGCTTCGACCAAGAAGAGGCAATGGCAATGATCAAAATTGCTTTCCTGTGCACGAATGTCTCCCCTCAGCAAGACCTACCATGTCCTCCGTGGTGAGCATGCTGGAAGGTAAAGTTGCTGTGAAGGAGCTGGTTCCAGAGAATGCAGATGCAGATGGCAATGACATGGTCGAAGAGATGAGCGCAATGTGGGCTCTTATTCAGCAGCAGGAGGAAATAACCGATGACGAGCACAAGACAAAAACTGGATCTACCAGTTCTTCGACATTGAACATCAATTAA 1605 40.75 MGRNLKDVEAYEWASLTSILDPIVLTQSEDEWNWPLNPNGQFSVRSLLANMEDRPWLIDPSLSKAIWKDNYPKKIKFFLWELAHKAISTKEVLQRRMPFAALSPGWCSLCKAEDESQDHIFIHCPFAQHFWYKIFSSFGWYLASPGNIKDYLCTIFLGHPFKNKKSILWLNISRAFFWILWKERNNRVFQNIASSFDSFFDLVIYYAISWYLKGQNLPIGSFTLKQITTATNNFDPSNKIGEGGFGPVYKGILLDGTMVAVKQLSTKSNQGNREFVNEIGLISSLNHPHLVKLYGCCIEADQLLLVYEYMENNSLAQALFAKGLAFLHEGSRLKIVHRDIKGSNVLLDKNLNPKISDFGLAKLDEEENTHINTRIAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTIYRERISTCIERKRKFNGASGSKVGLELRPRRGNGNDQNCFPVHECLPSARPTMSSVVSMLEGKVAVKELVPENADADGNDMVEEMSAMWALIQQQEEITDDEHKTKTGSTSSSTLNIN 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29573455 29576537 - Maker00036998 Lcy6g1627 636071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1627 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1627 534 MobiDBLite consensus disorder prediction 513 534 - -
Lcy6g1627 534 ProSiteProfiles Protein kinase domain profile. 234 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1627 534 Gene3D Transferase(Phosphotransferase) domain 1 310 498 - -
Lcy6g1627 534 SUPERFAMILY Protein kinase-like (PK-like) 217 476 IPR011009 -
Lcy6g1627 534 Pfam zinc-binding in reverse transcriptase 43 131 IPR026960 -
Lcy6g1627 534 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 207 309 - -
Lcy6g1627 534 FunFam Os07g0541700 protein 306 378 - -
Lcy6g1627 534 Pfam Protein kinase domain 237 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1627 534 Gene3D Phosphorylase Kinase; domain 1 210 309 - -
Lcy6g1627 534 SMART serkin_6 234 476 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1627 534 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 168 497 IPR051824 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1532 Lcy-Chr1:15097428 Lcy6g1627 Lcy-Chr6:29573455 3.75E-91 dispersed
Lcy6g0038 Lcy-Chr6:382307 Lcy6g1627 Lcy-Chr6:29573455 1.42E-46 dispersed
Lcy6g1627 Lcy-Chr6:29573455 Lcy9g1392 Lcy-Chr9:38928900 5.12E-152 dispersed
Lcy1g2551 Lcy-Chr1:46483928 Lcy6g1627 Lcy-Chr6:29573455 3.68E-161 wgd
Lcy1g2177 Lcy-Chr1:31284245 Lcy6g1627 Lcy-Chr6:29573455 6.39E-19 wgd
Lcy1g2205 Lcy-Chr1:32151252 Lcy6g1627 Lcy-Chr6:29573455 4.03E-35 wgd
Lcy1g2740 Lcy-Chr1:53982370 Lcy6g1627 Lcy-Chr6:29573455 2.19E-14 wgd
Lcy11g0813 Lcy-Chr11:24330542 Lcy6g1627 Lcy-Chr6:29573455 4.58E-86 wgd
Lcy2g2098 Lcy-Chr2:41574118 Lcy6g1627 Lcy-Chr6:29573455 1.30E-53 wgd
Lcy4g1465 Lcy-Chr4:36744521 Lcy6g1627 Lcy-Chr6:29573455 3.78E-88 wgd
Lcy5g1147 Lcy-Chr5:24670694 Lcy6g1627 Lcy-Chr6:29573455 4.77E-63 wgd
Lcy5g1077 Lcy-Chr5:21661229 Lcy6g1627 Lcy-Chr6:29573455 1.24E-34 wgd
Lcy5g0865 Lcy-Chr5:14182144 Lcy6g1627 Lcy-Chr6:29573455 1.76E-45 wgd
Lcy5g1398 Lcy-Chr5:33394077 Lcy6g1627 Lcy-Chr6:29573455 3.50E-49 wgd
Lcy6g1266 Lcy-Chr6:15602742 Lcy6g1627 Lcy-Chr6:29573455 1.65E-61 wgd
Lcy6g1627 Lcy-Chr6:29573455 Lcy7g1184 Lcy-Chr7:13874394 5.66E-61 wgd
Lcy6g1627 Lcy-Chr6:29573455 Lcy9g0416 Lcy-Chr9:11658724 4.98E-146 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66043 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1627 - - - 0.0