Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1648 ATGTCTCTACTTGTCAGGTCGGTGATGGCAGCTTCTGATTTATGGATAAAGGAATATAATGAAGCCTCTAAGCTTGGTGATGATATCAATGGCATGATTTCTGAAAGGAGTTCCTTTCCTGCAACTGGACCAGAAGCCCAACGTCATGCCTCTGCCATTCGGAGGAAGATCACAATTTTGGGGACTAAAGTTGATGGCTTACAGTCCCTTTTGTTGAAGCTTCCTGTAAAGCAGCCGCTGTCTGAAAAAGAGATAAATCGGCGTAAAGACATGCTTGCACAAATGAGATCAAAAGTAAACCAGATGGCCTCAACACTGAACATGTCGAACTTTGCTAACCGTGACAGTTTGTTCGGGCCAGATATGAAATCAGGAGACGTGATGAGCAAAACAGTTGGACTAGACAATCAAGGACTTGTTGAGCAAGATGAAGGTCTTGAAAAGCTGGAGGAGACTATTATAAGTACAAAACATATTGCATTGGCAGTTAATCAAGAACTCGATCTTCATACTCGCCTAATTGATGACTTGGACCAAGACGTCGATGTTACGGACTCTCGATTAGCAGTAAAATTCTCACTTCCTATTCATTAG 594 42.26 MSLLVRSVMAASDLWIKEYNEASKLGDDINGMISERSSFPATGPEAQRHASAIRRKITILGTKVDGLQSLLLKLPVKQPLSEKEINRRKDMLAQMRSKVNQMASTLNMSNFANRDSLFGPDMKSGDVMSKTVGLDNQGLVEQDEGLEKLEETIISTKHIALAVNQELDLHTRLIDDLDQDVDVTDSRLAVKFSLPIH 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30409358 30411560 - Maker00030545 Lcy6g1648 636092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1648 197 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 136 188 IPR000727 -
Lcy6g1648 197 Gene3D - 138 192 - -
Lcy6g1648 197 CDD SNARE_Qc 141 188 - -
Lcy6g1648 197 SUPERFAMILY SNARE fusion complex 136 189 - -
Lcy6g1648 197 FunFam syntaxin-51 isoform X2 139 194 - -
Lcy6g1648 197 PANTHER SYNTAXIN 16 187 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1648 Lcy-Chr6:30409358 Lcy9g1162 Lcy-Chr9:35814301 5.27E-85 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1648 K08503 - csv:101223140 311.612