Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g1672 | ATGCCTGAGACATTTGTTGCAATAAAAGAGCCTCGTCCTGTGGTTAGAAAGTTTCTCGCTAGACCTCAACATGAAGGCCTTGGCGCTGTTGTAAGAAGAAGCATCGGCAGGTTTGAGCTCAAATACTTTGATCCTTTTCTCGTTCTCGACGAGTTTTCTGTTACTGCGCCTGCTGGGTTCCCTGATCATCCACACAGGGGATTTGAGACGGTCACCTACATGTTGAAGGGAGCAATGACACATGAAGATTTCAAAGGACATAAAGGAACAATTGGAGCTGGTGACTTGCAATGGATGACTGCAGGCAAAGGCATTGTTCACTCTGAAATGCCTGCATCCCATGGCACCCAACATGGCTTACAACTTTGGATCAATCTCTCCTCCAAACACAAAATGATCGAGCCAAGGTATCAGGAAATACGCAGCAAGGACATAGTAGAAGCCACAAAAGATGGAGTAAAAGTGAGAGTGATAGCAGGGGAAGCCTTGGGAGCAAAATCCCCAATCTACACAACAACTCCGACTATGTATTTGGACTTCACTCTCGCCCCGGGATCTCACATCGAGCAGCCGATCCCGATGGGGTGGAATGCGTTCGTGTACGTGCTTGAAAGCGAGGGCGGAGTGTTCGGGGGCTCGAAATCAATGCCCGTTACACCACATCACCTTCTTTTGTTAGGGAGTGGGGATGGGTTGGAGGCTTGGAACAAGTCCTCATCAAAAGCTCTCAGGTTCATATTGGTTGGGGGTCAGCCATTGAATGAGAGTGTTGTGCAGTTGGGGCCATTTGTAATGAACACTCAAGAAGACATTGACCAAACCATTGAGGATTTTGAGAATTGTACAAATGGCTTTGAGAGAGCAACGCATTGGAGATCACAAGCTTAG | 888 | 47.52 | MPETFVAIKEPRPVVRKFLARPQHEGLGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLKGAMTHEDFKGHKGTIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEIRSKDIVEATKDGVKVRVIAGEALGAKSPIYTTTPTMYLDFTLAPGSHIEQPIPMGWNAFVYVLESEGGVFGGSKSMPVTPHHLLLLGSGDGLEAWNKSSSKALRFILVGGQPLNESVVQLGPFVMNTQEDIDQTIEDFENCTNGFERATHWRSQA | 295 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 31459536 | 31461721 | + | Maker00030461 | Lcy6g1672 | 636116 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g1672 | 295 | PIRSF | Pirin | 10 | 292 | IPR012093 | - | |
| Lcy6g1672 | 295 | Gene3D | Jelly Rolls | 25 | 279 | IPR014710 | - | |
| Lcy6g1672 | 295 | Pfam | Pirin | 31 | 124 | IPR003829 | - | |
| Lcy6g1672 | 295 | CDD | cupin_pirin_C | 174 | 252 | - | - | |
| Lcy6g1672 | 295 | SUPERFAMILY | RmlC-like cupins | 13 | 293 | IPR011051 | - | |
| Lcy6g1672 | 295 | PANTHER | PIRIN-RELATED | 8 | 294 | IPR012093 | - | |
| Lcy6g1672 | 295 | CDD | cupin_pirin_N | 29 | 126 | - | - | |
| Lcy6g1672 | 295 | Gene3D | Jelly Rolls | 146 | 253 | IPR014710 | - | |
| Lcy6g1672 | 295 | FunFam | pirin | 25 | 162 | - | - | |
| Lcy6g1672 | 295 | Pfam | Pirin C-terminal cupin domain | 177 | 284 | IPR008778 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g1247 | Lcy-Chr11:35451720 | Lcy6g1672 | Lcy-Chr6:31459536 | 2.96E-139 | dispersed | |
| Lcy6g1672 | Lcy-Chr6:31459536 | Lcy9g1146 | Lcy-Chr9:35454811 | 3.49E-79 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy6g1672 | K06911 | - | csv:101204082 | 504.212 |