Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1672 ATGCCTGAGACATTTGTTGCAATAAAAGAGCCTCGTCCTGTGGTTAGAAAGTTTCTCGCTAGACCTCAACATGAAGGCCTTGGCGCTGTTGTAAGAAGAAGCATCGGCAGGTTTGAGCTCAAATACTTTGATCCTTTTCTCGTTCTCGACGAGTTTTCTGTTACTGCGCCTGCTGGGTTCCCTGATCATCCACACAGGGGATTTGAGACGGTCACCTACATGTTGAAGGGAGCAATGACACATGAAGATTTCAAAGGACATAAAGGAACAATTGGAGCTGGTGACTTGCAATGGATGACTGCAGGCAAAGGCATTGTTCACTCTGAAATGCCTGCATCCCATGGCACCCAACATGGCTTACAACTTTGGATCAATCTCTCCTCCAAACACAAAATGATCGAGCCAAGGTATCAGGAAATACGCAGCAAGGACATAGTAGAAGCCACAAAAGATGGAGTAAAAGTGAGAGTGATAGCAGGGGAAGCCTTGGGAGCAAAATCCCCAATCTACACAACAACTCCGACTATGTATTTGGACTTCACTCTCGCCCCGGGATCTCACATCGAGCAGCCGATCCCGATGGGGTGGAATGCGTTCGTGTACGTGCTTGAAAGCGAGGGCGGAGTGTTCGGGGGCTCGAAATCAATGCCCGTTACACCACATCACCTTCTTTTGTTAGGGAGTGGGGATGGGTTGGAGGCTTGGAACAAGTCCTCATCAAAAGCTCTCAGGTTCATATTGGTTGGGGGTCAGCCATTGAATGAGAGTGTTGTGCAGTTGGGGCCATTTGTAATGAACACTCAAGAAGACATTGACCAAACCATTGAGGATTTTGAGAATTGTACAAATGGCTTTGAGAGAGCAACGCATTGGAGATCACAAGCTTAG 888 47.52 MPETFVAIKEPRPVVRKFLARPQHEGLGAVVRRSIGRFELKYFDPFLVLDEFSVTAPAGFPDHPHRGFETVTYMLKGAMTHEDFKGHKGTIGAGDLQWMTAGKGIVHSEMPASHGTQHGLQLWINLSSKHKMIEPRYQEIRSKDIVEATKDGVKVRVIAGEALGAKSPIYTTTPTMYLDFTLAPGSHIEQPIPMGWNAFVYVLESEGGVFGGSKSMPVTPHHLLLLGSGDGLEAWNKSSSKALRFILVGGQPLNESVVQLGPFVMNTQEDIDQTIEDFENCTNGFERATHWRSQA 295
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 31459536 31461721 + Maker00030461 Lcy6g1672 636116
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1672 295 PIRSF Pirin 10 292 IPR012093 -
Lcy6g1672 295 Gene3D Jelly Rolls 25 279 IPR014710 -
Lcy6g1672 295 Pfam Pirin 31 124 IPR003829 -
Lcy6g1672 295 CDD cupin_pirin_C 174 252 - -
Lcy6g1672 295 SUPERFAMILY RmlC-like cupins 13 293 IPR011051 -
Lcy6g1672 295 PANTHER PIRIN-RELATED 8 294 IPR012093 -
Lcy6g1672 295 CDD cupin_pirin_N 29 126 - -
Lcy6g1672 295 Gene3D Jelly Rolls 146 253 IPR014710 -
Lcy6g1672 295 FunFam pirin 25 162 - -
Lcy6g1672 295 Pfam Pirin C-terminal cupin domain 177 284 IPR008778 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1247 Lcy-Chr11:35451720 Lcy6g1672 Lcy-Chr6:31459536 2.96E-139 dispersed
Lcy6g1672 Lcy-Chr6:31459536 Lcy9g1146 Lcy-Chr9:35454811 3.49E-79 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1672 K06911 - csv:101204082 504.212