Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1698 ATGATACTATGGGATGTTTCTTTTTTCCTTCAGATGCCTAGTGTAATGACAGACTCATCTGAGAAGGACTCAGAGCCGTTCGTAGAAGTAAATCCGACGGGCCGATACGGGCGGTACGGCGAGCTTCTCGGGTCGGGGGCGGTGAAGAAAGTGTACAGAGCATTTGATCAAGAAGAAGGAATTGAGGTGGCTTGGAACCAAGTGAAACTAAGGAGCTTTTCAAATGATCCATCGATGATTGATAGGCTTTACTCGGAGGTGACACTGTTAAGAACCCTAAAGAACAACAACATCATTGCCTTGTACGATGTGTGGCTTGACAAACTTCATGGAACCCTAAATTTCATCACTGAGGTTTGTACAAGTGGGAACCTTAGAGAGTACAGGAAGAAACATAGGCAAGTTTCTTTGAAGGCTTTGAAGAAATGGTCCAAGCAGATTCTTCAGGGTTTGCACTATTTGCATACTCATGAGCCTTGCGTTATTCATAGAGATCTCAATTGTAGTAACCTCTTTGTCAATGGCAATGTTGGCCAGGTGAAGATTGGTGACTTGGGTTTGGCAGCAACAGTGGGAAAGAATCATTCAGCTCATTCAGTACTTGGGACACCAGAATTCATGGCACCTGAGCTATATGAGGAGCATTACACAGAGCTTGTGGACATATATTCATTTGGAATGTGTTTGCTTGAATTGGTCACCTTGGAAATTCCCTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTCTCCTCAGGGATTAAGCCTCAAGCCCTTGGCAAGGTCAAGGACCCTGAGGTTAAGGCTTTCATTGAGAAGTGCCTTGCTCAGTACCAAGAACGGCCCTCCGCCGACGACCTCCTCCGTGACCCCTTTTTTGGAGAAATTGATGATGACGAAAACGACGACGATGATCATTAG 927 44.77 MILWDVSFFLQMPSVMTDSSEKDSEPFVEVNPTGRYGRYGELLGSGAVKKVYRAFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVTLLRTLKNNNIIALYDVWLDKLHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILQGLHYLHTHEPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVGKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPQALGKVKDPEVKAFIEKCLAQYQERPSADDLLRDPFFGEIDDDENDDDDH 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32416849 32418578 - Maker00030478 Lcy6g1698 636142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1698 308 ProSiteProfiles Protein kinase domain profile. 37 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1698 308 CDD STKc_WNK 35 295 - -
Lcy6g1698 308 Gene3D Phosphorylase Kinase; domain 1 20 118 - -
Lcy6g1698 308 Pfam Protein kinase domain 40 295 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1698 308 PIRSF TyrPK_CSF1-R 36 142 - -
Lcy6g1698 308 PIRSF TyrPK_CSF1-R 127 291 - -
Lcy6g1698 308 MobiDBLite consensus disorder prediction 288 308 - -
Lcy6g1698 308 Gene3D Transferase(Phosphotransferase) domain 1 120 300 - -
Lcy6g1698 308 FunFam Probable serine/threonine-protein kinase WNK1 21 118 - -
Lcy6g1698 308 FunFam probable serine/threonine-protein kinase WNK9 120 301 - -
Lcy6g1698 308 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 296 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lcy6g1698 308 SUPERFAMILY Protein kinase-like (PK-like) 39 300 IPR011009 -
Lcy6g1698 308 MobiDBLite consensus disorder prediction 294 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1698 Lcy-Chr6:32416849 Lcy8g1692 Lcy-Chr8:43517851 3.34E-111 dispersed
Lcy8g1367 Lcy-Chr8:40408986 Lcy6g1698 Lcy-Chr6:32416849 4.36E-163 transposed
Lcy1g2823 Lcy-Chr1:56430690 Lcy6g1698 Lcy-Chr6:32416849 5.71E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66044 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1698 K08867 - csv:101221172 534.258