Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1706 ATGGACCCCACTGACTCTCACTGGACTTCCACTGACCCCAACCTCGCCGATCCATCTCATGCCCGCCCACCCCCTTCTTCTGAACCTTCCTCCGCCGCTGCTGCTGGCGCCAAGTACAAGCTAATGTCTCCGGCCAAGCTCCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCCGGCCTCAGTCCCACTTCCTTTCTCGAGTCCCCCGTTTTGCTCACCAACTTGAAGAGCAGTCCACTGCATTGGGTGGCTCCTTTATGCCCGTGTGGGTTATTCCATAAAATTGCTTTAGGGAATAATGCTGTTGTAGAGCCTTCTCCGACTACTGGATCCCTTACCAAGCTTCCAATGGCACATGACTCTTCTAGCTCAGCTATTTATTCAATGACCACTATGGCTTTCTCAAATACAAATGCCTCAGATGAAGGAAAATCCAGCTACTTCGAGTTCAAACCATATGTTGGACCGAATATGGTTCCTGCAGATCTGAGTCATAGGAAAGGTGAACAATCTAAAGAAGTTCAAGTTCAAGGTCAACCTCTACCATTTACTGCTCCACCCATGACTAAAAGTGAGATCAATGTCATTTCAAATGATTTGAGTCGATCCACCCAGATGGATACGGTTGCCTCAGGGGCTAGTGTTCCTGAAGTTGATGGAGAAGATTTCAACCATAATATGAACACAAGTACCAGGGTTCAGCCCCCCCAGTCTGATCCAAAAGGCAGTGGCATTTCAGTAGCTTCTGATAGGTTATCTGATGATGGATATAACTGGCGGAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGTAGTTATTATAAATGTACACATCCTTCCTGTGAAGTGAAAAAGCTCTTTGAACGCTCTCATGATGGACAGATAACTGATATTATCTATAAGGGTACACATGATCATCCTAAGCCTCAGCCAAGTCGGCGATATACTGCCAGTGCTTCTGTGAATGTTCAAGAAGATGGGTCTGATAAGCCTTCACATTTAACTGGCCAAGATGACAGGTCGTGCGGCATATATGCTCAGACAGTGCATACCATTGAGCCAAATGGAACTTCAGAACCATCCCTTGCTGCAAATGATAGCATCGCCGAAGGTGCAGGAACAACTCTGCCATGCAAGAATCATGATGAGGTTGATGACGATGACATATTCTCAAAGCGGAGGAAAATGGAACTTGGTGGTTTCGACGTCTGCCCAATGGTTAAGCCAATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGTGAGGTTGATATACTGGATGATGGGTATCGCTGGCGCAAATACGGCCAGAAGGTAGTGAGAGGGAACCCCAACCCGAGGAGTTATTATAAGTGCACAAATGTTGGATGTCCTGTTAGAAAACATGTCGAAAGAGCGTCCCATGACCCAAAAGCTGTTATAACTACATATGAGGGGAAACATAATCACGATGTTCCGACTGCAAAAACTAGTAGCCATGATGTCGCAGGCCCATCAACAATTGCACCATCAAGGTATAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGGATTGGGACAGGTGGCGAGAATCGATCAAATGAATACAGGCAGGCATTGCATCCTCAACTGGTTGAAAACCAAACTCCAAATGGCAATTTCAACTTCGAAGTGGTTCAAGAAAACTCAGCCCCAACCTATTTCGGTGTTCTCAATAGAGGTATAAACCAGCATGGATCAAGAGAGAGTTTGAGCGAAAGCCACCCAATGGAGATTGCTCCGCTAAACCATTCGTCTCACCCATATCCGCCGAGCATTGGGAGAATACTAACAGGGCCATAA 1845 46.5 MDPTDSHWTSTDPNLADPSHARPPPSSEPSSAAAAGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKSSPLHWVAPLCPCGLFHKIALGNNAVVEPSPTTGSLTKLPMAHDSSSSAIYSMTTMAFSNTNASDEGKSSYFEFKPYVGPNMVPADLSHRKGEQSKEVQVQGQPLPFTAPPMTKSEINVISNDLSRSTQMDTVASGASVPEVDGEDFNHNMNTSTRVQPPQSDPKGSGISVASDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPSCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYTASASVNVQEDGSDKPSHLTGQDDRSCGIYAQTVHTIEPNGTSEPSLAANDSIAEGAGTTLPCKNHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHDVAGPSTIAPSRYRLEESDTISLDLGVGIGTGGENRSNEYRQALHPQLVENQTPNGNFNFEVVQENSAPTYFGVLNRGINQHGSRESLSESHPMEIAPLNHSSHPYPPSIGRILTGP 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32737111 32747437 + Maker00030457 Lcy6g1706 636150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1706 614 Pfam WRKY DNA -binding domain 431 488 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 Pfam WRKY DNA -binding domain 255 311 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 ProSiteProfiles WRKY domain profile. 425 490 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 SUPERFAMILY WRKY DNA-binding domain 252 313 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 MobiDBLite consensus disorder prediction 304 344 - -
Lcy6g1706 614 MobiDBLite consensus disorder prediction 1 16 - -
Lcy6g1706 614 SUPERFAMILY WRKY DNA-binding domain 422 490 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 MobiDBLite consensus disorder prediction 317 334 - -
Lcy6g1706 614 ProSiteProfiles WRKY domain profile. 249 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 SMART WRKY_cls 430 489 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 SMART WRKY_cls 254 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 FunFam WRKY transcription factor 33 417 483 - -
Lcy6g1706 614 MobiDBLite consensus disorder prediction 226 245 - -
Lcy6g1706 614 Gene3D WRKY domain 417 483 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 141 499 IPR044810 GO:0003700(InterPro)
Lcy6g1706 614 Gene3D WRKY domain 246 314 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1706 614 MobiDBLite consensus disorder prediction 1 35 - -
Lcy6g1706 614 MobiDBLite consensus disorder prediction 226 254 - -
Lcy6g1706 614 FunFam WRKY transcription factor 244 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1456 Lcy-Chr2:18039992 Lcy6g1706 Lcy-Chr6:32737111 1.98E-73 dispersed
Lcy6g1706 Lcy-Chr6:32737111 Lcy6g1902 Lcy-Chr6:39836153 1.07E-91 dispersed
Lcy2g0178 Lcy-Chr2:1427287 Lcy6g1706 Lcy-Chr6:32737111 7.17E-44 transposed
Lcy4g0364 Lcy-Chr4:4589451 Lcy6g1706 Lcy-Chr6:32737111 1.71E-75 transposed
Lcy12g0862 Lcy-Chr12:11979788 Lcy6g1706 Lcy-Chr6:32737111 2.99E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20317 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1706 - - - 0.0