Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1707 ATGCAAGAACCTTCAAGAAAGAAAGTTCCAAATCAATCTCATAGGTTTTATGAACAACCACAGCAAGAACCTGGATCCTATTACTGGCCTCCTATCAACCAACAAGGCTTGTATTCTGACGATGTAATCGAACAAAATCACTTACCATCTGAGGCTTTCAAGCAGTACTGCAACCTTGAGTCGTCCTCAGGAACTAGTAGTTTCCCTCATCAAAATTCTTCCTCTACTGCTAGCTTCGCATCAAATGGAAGCCCTTCTTCACACCAAGAGTGCCATTCATACCCGCTAGACCCCTATTATTCTCCTGACAATGGATCACCTGTCAGTAGATCTTGCTTGACAGATGAAGCTGCTGATGACTTAAGGCACAAGATCAGGGAATTGGAGACTGCAATGCTGGGACCTGATGCAGATAGGCTTGACATCTATTCCGTCACTAATCCAGTCAATCCTGTAGCACCTGTGCAGGAAGCAGGGTGGAATGATGTGGCTGAGATAATCTCTAGAAAGGATTTGAAAGAGTTGCTTTGTGCTTGTGCACGAGCGATTGGAGAAAATGATATGTTGACTGGAGAATGGTTGGTGTCAGAATTACGTGGAATGGTTTCGGTTTCTGGTGAGCCGATCCAGCGCTTAGGAGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCCTCTTCAGGTAGTTCTATCTACAAAGCCCTAAGATGTAAAGAGCCTATAGGTTCTGAACTGCTCTCATACATGCACATTCTCTATGAAGTTTGCCCTTATTTCAAGTTTGGGTACCTATCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATCATTGATTTTCAGATAGCACAAGGAAATCAGTGGATCACATTGATGCAAGCTCTTGCCAATCGGCCTGGAGGGCCCCCAAAGATTACTATTACAGGCATAGATGATTCTACTTCAGCTTTTGCTCGAGGAGGGGGGCTCGAGATTGTAGGAAAAAGGTTGTCGATTTTGGCAGAGTCATTAATGGTACCCTTTGAGTTCCATGGGATTGCTGGCTCTGCTTCTGAAATTCAACGTGAAGATCTAAAAGTTCAACCAGGTGAGGCCATTGCTGTGAATTTTGCCATGGTGCTGCACCATATGCCAGATGAAAGTGTTGGCAGTCAGAATCACAGGGATCGAATTTTGCGGTTGGTCAAGAGCTTGTCTCCAAAAGTTGTGACCCTTGTTGAGCACGAGTCAAACAACAATACAGCTCCCTTTTTTCCCCGTTTCCTCCAGACATTGAAATATTATACTGCTATTTTCGAATCCATAGACGTGACTCTTCCAAGAGAGCACAAGGAGCGGATCAATGTGGAGCAGCACTGTTTAGCTCGGGACATTGTTAATATAGTGGCATGTGAGGGAGCTGAAAGAGTCGAACGACATGAACTTCTCGGAAAGTGGAGATCAAGGTTCTTCATGGCGGGGTTTAAGCCACATCCTCTAAGCCCTTTTGTCAATGCTACCATTGAGGCACTGCTAAAGAACTACTGTGACAAGTACACACTTGAAGAAAGGGATGGAGCTCTATATCTCGGCTGGTTGAATCAAAATTTAGTTACCTCTAGTGCTTGGATTTGA 1629 44.38 MQEPSRKKVPNQSHRFYEQPQQEPGSYYWPPINQQGLYSDDVIEQNHLPSEAFKQYCNLESSSGTSSFPHQNSSSTASFASNGSPSSHQECHSYPLDPYYSPDNGSPVSRSCLTDEAADDLRHKIRELETAMLGPDADRLDIYSVTNPVNPVAPVQEAGWNDVAEIISRKDLKELLCACARAIGENDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSSIYKALRCKEPIGSELLSYMHILYEVCPYFKFGYLSANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKITITGIDDSTSAFARGGGLEIVGKRLSILAESLMVPFEFHGIAGSASEIQREDLKVQPGEAIAVNFAMVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTLVEHESNNNTAPFFPRFLQTLKYYTAIFESIDVTLPREHKERINVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFFMAGFKPHPLSPFVNATIEALLKNYCDKYTLEERDGALYLGWLNQNLVTSSAWI 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 32744414 32746042 - Maker00030601 Lcy6g1707 636151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1707 542 MobiDBLite consensus disorder prediction 60 100 - -
Lcy6g1707 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 541 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy6g1707 542 Pfam GRAS domain family 172 541 IPR005202 -
Lcy6g1707 542 MobiDBLite consensus disorder prediction 1 34 - -
Lcy6g1707 542 MobiDBLite consensus disorder prediction 60 91 - -
Lcy6g1707 542 ProSiteProfiles GRAS family profile. 163 542 IPR005202 -
Lcy6g1707 542 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g0779 Lcy-Chr2:6922706 Lcy6g1707 Lcy-Chr6:32744414 1.00E-60 dispersed
Lcy6g0963 Lcy-Chr6:10061316 Lcy6g1707 Lcy-Chr6:32744414 6.69E-53 dispersed
Lcy6g1707 Lcy-Chr6:32744414 Lcy8g1797 Lcy-Chr8:44374285 2.24E-58 dispersed
Lcy7g0679 Lcy-Chr7:6284297 Lcy6g1707 Lcy-Chr6:32744414 2.88E-59 transposed
Lcy8g1366 Lcy-Chr8:40399681 Lcy6g1707 Lcy-Chr6:32744414 6.24E-222 transposed
Lcy9g1234 Lcy-Chr9:36817728 Lcy6g1707 Lcy-Chr6:32744414 3.99E-170 transposed
Lcy6g1707 Lcy-Chr6:32744414 Lcy6g1910 Lcy-Chr6:40069776 1.91E-51 wgd
Lcy6g1707 Lcy-Chr6:32744414 Lcy9g0957 Lcy-Chr9:32038209 2.23E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20318 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1707 K27748 - csv:101220072 982.245