Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1808 CCTTCATGGGCGTACCTTACTAGAAATTTAATACTTGCATACCGAAGTGTTGGAGTAGTTTATGGAGATTTGAGCACTTCGCCCCTCTATGTATACTCGAGTACATTTGCGGGGAAGTTTCAGAAACATCACACTGAGGAAGCAGTATTTGGAGGAACCTTTGCTCTTTACTCCCTGCTCTGCCGACATGTTAAACTAAGTTTACTTCCTAACCAACAAGCAGCTGATGAGGAGCTCTCAGCTTACAAATATGGTCCATCTTCTCACGTAGGAGCCCCTTCTCCACTAAAAAGGTTTTTGGAAAGGCATAAAACACTTAGGATGGTCTTACTTCTTGTCGTATTATTTGGTGCTTGCATGGTCATTGGTGATGGCGTGCTAACTCCTGCAATTTCAGTTATGGGTGTAAGGTTTGTCTACTTGATTGTTTATGAACTTGGCACTTGTCCTGTGCGGCAGATTGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAACGTATACATTGTGATTGTTGTAAGCAGCAATGCAAATGTTGCTTGTGCATTCAAGTTTGTTGTTGAGGCAGTTGGCATCTTCTTTATGGTTGTATATTTCAGTGGTTCTTTTCCTTTATAA 618 41.26 PSWAYLTRNLILAYRSVGVVYGDLSTSPLYVYSSTFAGKFQKHHTEEAVFGGTFALYSLLCRHVKLSLLPNQQAADEELSAYKYGPSSHVGAPSPLKRFLERHKTLRMVLLLVVLFGACMVIGDGVLTPAISVMGVRFVYLIVYELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVGIFFMVVYFSGSFPL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37052524 37054280 + Maker00005323 Lcy6g1808 636252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1808 205 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 8 50 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Lcy6g1808 205 Gene3D - 124 202 - -
Lcy6g1808 205 Pfam K+ potassium transporter integral membrane domain 13 135 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1808 Lcy-Chr6:37052524 Lcy7g1064 Lcy-Chr7:11363119 1.50E-35 dispersed
Lcy12g1933 Lcy-Chr12:40627796 Lcy6g1808 Lcy-Chr6:37052524 2.01E-23 transposed
Lcy11g0921 Lcy-Chr11:27668715 Lcy6g1808 Lcy-Chr6:37052524 1.60E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1808 K03549 - csv:101208973 218.009