Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1817 ATGCCCCCAAGAAACCTCCTCGTTTTCGCCCTTTTCCTCGTTCTCTTCCCCCCACCAGAAACACACAGCATCGGTTTCGATTTCACTTCTTTCAACATCAGAAACCTCACTCTCCTCGGCGATTCCCATCTCCGCGACGGCGTAATCGGCCTCACCAAGGAGCTCGGTGTCCCTTCCTCAAGCGCCGGCGCCGTTATTTACAACAAACCCATCGGATTTTACGACGCCGATTCCAACATCACCGCCTCTTTCTCCACAAGATTCTCCTTCTCCATCACCAACATCAACCCCACTTCCTTCGGCGATGGCCTTTCCTTCTTCCTCTCGCCTGATAATCAGACCCTCGGCAGTCCAGGTGGGTATTTGGGGCTCGTCAATTCCTCCCAATTGACCAAGAACAAGTTTGTGGCCGTTGAGTTTGATACGCGCCTCGATTCTTACTTCAGTGATCCCAATGCCCATCATGTTGGTTTGGACATTGAGAGCTTGATTTCGATCAAGACGGCCAACCCTGTTTCTCAGGGAGTCAATCTCAAGAGTGGCAAGTTGATTACGGCTTGGATTGAGTACAAGAATGAGGAGGGTAGGTTGAGGGTCTTCTTGAGTCATTCTGCTTTGAAGCCTTCCGAAGCGCTTCTCGAAGTCGATGTCGATCTTTCGAGCTATCTCAAGGAGGTTATGTATGTCGGGTTTTCGGGTTCGACTGAAGGGAGTACTGAGCTTCATTTGATTCAGAGTTGGAGCTTTAATACTTCTGGGTTTGTTCCTGCTCGGCCTAGATTTAATCCTCATAATGTTTCTGATAGCTCTGTGATTGTTTCTCCTAATATTTCTATATCTGATTCTGGCAATGGACATCGTAGTAGGCTCGGGTTGGGTCTCGGCATCGCTGGACCGGCCTTCTTTTGTGCTGTGATTGCTGTGTTTGGTTTCTTTTCGCTTAGGAAATGGAGGAAGATTAGGACTCAGAAGAGCTTCAAGGCGGAGCTTTTGACAGGTCCTAGAGAGTTTGGTTATAAAGAACTTAAGACAGCCACAAAAGGGTTTCACTCCAGTAGGATCATTGGCAATGGAGCTTTTGGGACTGTCTATAAAGCTTTTTGCATCTCGTCTGGAACTATTTCGGCAGTCAAAAGATCGAAGCATTCCCACGAAGGGAAGACCGAATTCCTGGCTGAGTTATCGATCATAGCTCGGTTGAGGCACAAGAATTTGGTTCAGCTCCAAGGTTGGTGTGTCGAGAAGGGCGAACTGTTGCTTGTTTACGACTTTATGCCGAATGGAAGCCTCGATAGGCTGCTTTACCAGGAATCAGGAGAAGCTAGCTTGTTAAACTGGTCTCACAGATACAACGTTGCTGTTGGGTTGGCCTCTGTGTTGACATATCTACATCAGGAATGTGAGCAGCAGGTCATCCATAGAGATATAAAGACTGAGCCGGTGTTCGTACCGAAAATGAAGCCTAGTCTAACATTTTCTTGTGGCTTTTCACTGACTGTGGATGACATTATAGTAGAGGAAGGAGGAGAATGGGAATCTTCAAAGACGACCGTTGTCCAAATAGACTGA 1569 47.48 MPPRNLLVFALFLVLFPPPETHSIGFDFTSFNIRNLTLLGDSHLRDGVIGLTKELGVPSSSAGAVIYNKPIGFYDADSNITASFSTRFSFSITNINPTSFGDGLSFFLSPDNQTLGSPGGYLGLVNSSQLTKNKFVAVEFDTRLDSYFSDPNAHHVGLDIESLISIKTANPVSQGVNLKSGKLITAWIEYKNEEGRLRVFLSHSALKPSEALLEVDVDLSSYLKEVMYVGFSGSTEGSTELHLIQSWSFNTSGFVPARPRFNPHNVSDSSVIVSPNISISDSGNGHRSRLGLGLGIAGPAFFCAVIAVFGFFSLRKWRKIRTQKSFKAELLTGPREFGYKELKTATKGFHSSRIIGNGAFGTVYKAFCISSGTISAVKRSKHSHEGKTEFLAELSIIARLRHKNLVQLQGWCVEKGELLLVYDFMPNGSLDRLLYQESGEASLLNWSHRYNVAVGLASVLTYLHQECEQQVIHRDIKTEPVFVPKMKPSLTFSCGFSLTVDDIIVEEGGEWESSKTTVVQID 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37299071 37301080 - Maker00027670 Lcy6g1817 636261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1817 522 FunFam L-type lectin-domain containing receptor kinase VIII.1 22 262 - -
Lcy6g1817 522 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 257 IPR013320 -
Lcy6g1817 522 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Lcy6g1817 522 PANTHER - 36 482 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lcy6g1817 522 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Lcy6g1817 522 FunFam L-type lectin-domain containing receptor kinase VIII.1 313 424 - -
Lcy6g1817 522 ProSiteProfiles Protein kinase domain profile. 349 522 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1817 522 CDD lectin_legume_LecRK_Arcelin_ConA 26 253 IPR001220 GO:0030246(InterPro)
Lcy6g1817 522 Pfam Protein kinase domain 349 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1817 522 Pfam Legume lectin domain 25 256 IPR001220 GO:0030246(InterPro)
Lcy6g1817 522 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524(InterPro)
Lcy6g1817 522 Gene3D Transferase(Phosphotransferase) domain 1 425 502 - -
Lcy6g1817 522 SUPERFAMILY Protein kinase-like (PK-like) 329 483 IPR011009 -
Lcy6g1817 522 Gene3D - 22 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1817 Lcy-Chr6:37299071 Lcy5g0187 Lcy-Chr5:1859285 1.85E-69 dispersed
Lcy10g1328 Lcy-Chr10:36143625 Lcy6g1817 Lcy-Chr6:37299071 5.43E-88 transposed
Lcy1g1528 Lcy-Chr1:15062404 Lcy6g1817 Lcy-Chr6:37299071 6.64E-14 transposed
Lcy13g1039 Lcy-Chr13:22711472 Lcy6g1817 Lcy-Chr6:37299071 4.05E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66045 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1817 - - - 0.0