Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1821 ATGTGCATAGTGTTCTCGGTGAAGGACTTGTGGACTGTCTTGGAGTGGCCTACGAGTCTCATTGAGGAAGATGCTACTTCATTTCAGGTGAATGGGGACACTTGGGACCTCTACTTCTCTATAAATCTCTCTGCTGCTTCCCATCTTAGAGACAGTCTCAAGCTCTGGTTAGTCACTTTTAGAGAGAGAAACACATTACCAAAATCTATAGAGAAAGAAAAGAAAGAAAAGGAAAGAAGGGCAATAATGGAATGTGGAGGAACCGCTGGAGGAGGAGGTGATGGCTTCCACAGCTATAGAAGGCAACAGCCTAAGCCAGCCTCTGCGTTGAACATGTTGTTGACCCCAAACAAGCCATCCTCTGGCAACAACACTCCCAGTAGCAACCACCACCACTCAAACGGTCGAAACGCGACAACCAACTCCCCCGCTACCGGGTCTGCCTCGGTGGTCGCCACTAACAATGAGCAGAGCCAACAATGCATCGTGCGGGAGCAAGACCAATACATGCCGATCGCTAATGTAATACGTATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCGGACGATGCCAAAGAGACCATCCAAGAATGCGTGTCGGAGTACATCAGCTTCATCACTGGCGAGGCCAACGAGCGATGCCAGCGAGAGCAGCGCAAGACGGTGACGGCAGAGGATGTCCTCTGGGCTATGGGAAAGCTAGGCTTTGACGACTACATTGAGCCACTGACTGTGTTCCTCAATCGCTATCGTGAGTCTGAGAGCGATCGAATTCGTACAGAGCCAATCATGAGGCGCAATGTGGATTACGGGCAACAAGTGGGGATGCTACCACCGTATGGGCAGGCGTTTCAGATAGGGCACGTCCCGACGGGGATGTTCGATGCAATGGGTGGGTACTACGGCGGAGGGGGGAGCGGCGGATCGAGCTCGGGGAATGGTAGCCAGCTTTGA 960 51.88 MCIVFSVKDLWTVLEWPTSLIEEDATSFQVNGDTWDLYFSINLSAASHLRDSLKLWLVTFRERNTLPKSIEKEKKEKERRAIMECGGTAGGGGDGFHSYRRQQPKPASALNMLLTPNKPSSGNNTPSSNHHHSNGRNATTNSPATGSASVVATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPIMRRNVDYGQQVGMLPPYGQAFQIGHVPTGMFDAMGGYYGGGGSGGSSSGNGSQL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37371827 37376889 + Maker00027626 Lcy6g1821 636265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1821 319 SUPERFAMILY Histone-fold 166 259 IPR009072 GO:0046982(InterPro)
Lcy6g1821 319 FunFam Nuclear transcription factor Y subunit B-6 158 271 - -
Lcy6g1821 319 ProSitePatterns NF-YB/HAP3 subunit signature. 200 216 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1821 319 PRINTS CCAAT-binding transcription factor subunit A signature 235 253 - -
Lcy6g1821 319 PRINTS CCAAT-binding transcription factor subunit A signature 216 234 - -
Lcy6g1821 319 PRINTS CCAAT-binding transcription factor subunit A signature 197 215 - -
Lcy6g1821 319 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 170 233 IPR003958 -
Lcy6g1821 319 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 153 260 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy6g1821 319 Gene3D Histone, subunit A 156 275 IPR009072 GO:0046982(InterPro)
Lcy6g1821 319 MobiDBLite consensus disorder prediction 111 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1821 Lcy-Chr6:37371827 Lcy8g1350 Lcy-Chr8:40251945 4.57E-40 dispersed
Lcy6g1821 Lcy-Chr6:37371827 Lcy6g1843 Lcy-Chr6:38144011 9.60E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20320 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1821 K08065 - csv:116402762 319.701