Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1843 ATGGCGGACTCCGACAACGAATCCGCCGGCGGCTACCAGAAATCGCCGGCGGCGTCGCCTCGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATCATGAAGAAGGGCCTTCCAGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAAGGAGAAGCGGAAGACCATCAACGGCGACGATTTGCTTTGGGCCATGGCCACGTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGGTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAGAGGACCACGCTCGCCTCTCGCGACGGCGCCGGCGCCGGATCTGCGAATACCGCGTTTTTTGACGGCGGCGGTGAATTTGGAGGTGGGATGGGGATGATGATGACGATGAATCCCAATGCTTATGGCTCTAATGGGCCGCGTTGGGATGGGCCTGGCTTTAATACTACTGGTCGGCCCAGCTCCCACAAGCTCGTTCTAAGGTCGGAAAATAGTGGGAAAGATCTCGATGGTCGTCCACGACGTGGTCGAGCTGAGAATCGTCTAAAGAATCGATTGAATCGAACTCCAAAAGCCAATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAACTAGCTAGTCATCTATCCGTCCAACTCGGAACTCTCCTTTACCAAGAGTCCGTCCAACTCTCTAGGCGATGGGGCCCACTTCACCGCTTTACCGAGAGTTCATGCTCTTATCCACAGGACGACTCCTCTTCTCCGGAGTATACCCGCCTGCCCAGAGCTCAACCACGGATCTCCACCATGACTATTAAGGCTCACAACTTCTTTGTTCGGCACCCGAGGATTCCACCCGACACGGCTACACCCGGGGCATGGCTCTGA 966 56.52 MADSDNESAGGYQKSPAASPREQDRLLPIANVGRIMKKGLPGNAKISKDAKETVQECVSEFISFVTGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGERTTLASRDGAGAGSANTAFFDGGGEFGGGMGMMMTMNPNAYGSNGPRWDGPGFNTTGRPSSHKLVLRSENSGKDLDGRPRRGRAENRLKNRLNRTPKANVGLWAHSQQSSPRTKYHRASPQLASHLSVQLGTLLYQESVQLSRRWGPLHRFTESSCSYPQDDSSSPEYTRLPRAQPRISTMTIKAHNFFVRHPRIPPDTATPGAWL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38144011 38150263 - Maker00027639 Lcy6g1843 636287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1843 321 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1843 321 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 146 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy6g1843 321 MobiDBLite consensus disorder prediction 1 26 - -
Lcy6g1843 321 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Lcy6g1843 321 FunFam Nuclear transcription factor Y subunit B-3 15 134 - -
Lcy6g1843 321 SUPERFAMILY Histone-fold 23 129 IPR009072 GO:0046982(InterPro)
Lcy6g1843 321 MobiDBLite consensus disorder prediction 207 229 - -
Lcy6g1843 321 MobiDBLite consensus disorder prediction 269 285 - -
Lcy6g1843 321 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Lcy6g1843 321 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Lcy6g1843 321 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Lcy6g1843 321 MobiDBLite consensus disorder prediction 215 229 - -
Lcy6g1843 321 Gene3D Histone, subunit A 15 133 IPR009072 GO:0046982(InterPro)
Lcy6g1843 321 MobiDBLite consensus disorder prediction 269 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1843 K08065 - - csv:101204640 279.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1843 Lcy-Chr6:38144011 Lcy7g0811 Lcy-Chr7:7893024 7.02E-51 dispersed
Lcy13g2021 Lcy-Chr13:39180852 Lcy6g1843 Lcy-Chr6:38144011 1.79E-14 transposed
Lcy4g2145 Lcy-Chr4:47987260 Lcy6g1843 Lcy-Chr6:38144011 1.58E-09 transposed
Lcy6g1821 Lcy-Chr6:37371827 Lcy6g1843 Lcy-Chr6:38144011 9.60E-38 transposed
Lcy8g1350 Lcy-Chr8:40251945 Lcy6g1843 Lcy-Chr6:38144011 3.32E-56 transposed
Lcy6g1843 Lcy-Chr6:38144011 Lcy8g0366 Lcy-Chr8:11206595 1.10E-17 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1821 . 159 259 CCAAT-HAP3 Transcription Factor Family AT5G47670 85.1 6.8e-47 184.9
Lcy8g1350 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 9.9e-38 154.5
Lcy6g1821 . 156 283 CCAAT-HAP3 Transcription Factor Family AT1G21970 70.1 3.3e-49 192.6
Lcy8g1350 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.9 1.3e-57 219.9
Lcy6g1843 . 1 149 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.3 3.2e-51 198.7
Lcy7g0811 . 108 212 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.0 1.1e-43 173.7
Lcy5g0258 . 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.0 1.0e-41 167.2
Lcy7g0811 . 102 215 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.5 5.3e-48 188.0
Lcy5g0258 . 1 154 CCAAT-HAP3 Transcription Factor Family AT2G38880 63.0 7.6e-47 184.1
Lcy8g1350 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.9e-42 169.5
Lcy6g1843 . 1 112 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.3 2.5e-42 169.1
Lcy3g1707 . 41 143 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.7 1.9e-40 162.9
Lcy6g1843 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.1 3.3e-40 162.2
Lcy8g1350 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 8.0e-39 157.5
Lcy5g0258 . 7 195 CCAAT-HAP3 Transcription Factor Family AT2G37060 62.0 9.5e-54 207.2
Lcy7g0811 . 105 256 CCAAT-HAP3 Transcription Factor Family AT2G37060 69.1 1.8e-52 203.0
Lcy8g1350 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.8e-44 176.4
Lcy6g1843 . 6 115 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.4e-43 172.2
Lcy8g1350 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.0e-44 175.3
Lcy6g1843 . 21 116 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 4.7e-42 168.7
Lcy7g0811 . 121 211 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.9 6.3e-39 158.3
Lcy5g0258 . 7 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.0 8.2e-39 157.9
Lcy8g1350 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 7.5e-52 201.1
Lcy6g1843 . 1 119 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 7.8e-49 191.0
Lcy7g0811 . 104 212 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.5 9.2e-42 167.5
Lcy5g0258 . 11 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.6 6.6e-40 161.4
Lcy7g0811 . 106 245 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.8e-52 203.0
Lcy5g0258 . 12 195 CCAAT-HAP3 Transcription Factor Family AT3G53340 57.6 1.7e-50 196.4
Lcy8g1350 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 3.7e-45 178.7
Lcy6g1843 . 6 137 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 3.1e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20321 None None None None Lcy TF