Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1843 ATGGCGGACTCCGACAACGAATCCGCCGGCGGCTACCAGAAATCGCCGGCGGCGTCGCCTCGGGAGCAGGACAGACTCCTCCCGATCGCGAACGTCGGCCGGATCATGAAGAAGGGCCTTCCAGGGAACGCCAAGATCTCAAAGGACGCCAAAGAGACCGTCCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCACAAGGAGAAGCGGAAGACCATCAACGGCGACGATTTGCTTTGGGCCATGGCCACGTTAGGGTTCGAAGACTATGTCGATCCTCTCAAGGTTTATCTCCAGCGCTTTCGAGAAATTGAAGGCGAGAGGACCACGCTCGCCTCTCGCGACGGCGCCGGCGCCGGATCTGCGAATACCGCGTTTTTTGACGGCGGCGGTGAATTTGGAGGTGGGATGGGGATGATGATGACGATGAATCCCAATGCTTATGGCTCTAATGGGCCGCGTTGGGATGGGCCTGGCTTTAATACTACTGGTCGGCCCAGCTCCCACAAGCTCGTTCTAAGGTCGGAAAATAGTGGGAAAGATCTCGATGGTCGTCCACGACGTGGTCGAGCTGAGAATCGTCTAAAGAATCGATTGAATCGAACTCCAAAAGCCAATGTGGGACTTTGGGCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAACTAGCTAGTCATCTATCCGTCCAACTCGGAACTCTCCTTTACCAAGAGTCCGTCCAACTCTCTAGGCGATGGGGCCCACTTCACCGCTTTACCGAGAGTTCATGCTCTTATCCACAGGACGACTCCTCTTCTCCGGAGTATACCCGCCTGCCCAGAGCTCAACCACGGATCTCCACCATGACTATTAAGGCTCACAACTTCTTTGTTCGGCACCCGAGGATTCCACCCGACACGGCTACACCCGGGGCATGGCTCTGA 966 56.52 MADSDNESAGGYQKSPAASPREQDRLLPIANVGRIMKKGLPGNAKISKDAKETVQECVSEFISFVTGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGERTTLASRDGAGAGSANTAFFDGGGEFGGGMGMMMTMNPNAYGSNGPRWDGPGFNTTGRPSSHKLVLRSENSGKDLDGRPRRGRAENRLKNRLNRTPKANVGLWAHSQQSSPRTKYHRASPQLASHLSVQLGTLLYQESVQLSRRWGPLHRFTESSCSYPQDDSSSPEYTRLPRAQPRISTMTIKAHNFFVRHPRIPPDTATPGAWL 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38144011 38150263 - Maker00027639 Lcy6g1843 636287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1843 321 ProSitePatterns NF-YB/HAP3 subunit signature. 57 73 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy6g1843 321 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 146 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy6g1843 321 MobiDBLite consensus disorder prediction 1 26 - -
Lcy6g1843 321 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Lcy6g1843 321 FunFam Nuclear transcription factor Y subunit B-3 15 134 - -
Lcy6g1843 321 SUPERFAMILY Histone-fold 23 129 IPR009072 GO:0046982(InterPro)
Lcy6g1843 321 MobiDBLite consensus disorder prediction 207 229 - -
Lcy6g1843 321 MobiDBLite consensus disorder prediction 269 285 - -
Lcy6g1843 321 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Lcy6g1843 321 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Lcy6g1843 321 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Lcy6g1843 321 MobiDBLite consensus disorder prediction 215 229 - -
Lcy6g1843 321 Gene3D Histone, subunit A 15 133 IPR009072 GO:0046982(InterPro)
Lcy6g1843 321 MobiDBLite consensus disorder prediction 269 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1843 Lcy-Chr6:38144011 Lcy7g0811 Lcy-Chr7:7893024 7.02E-51 dispersed
Lcy13g2021 Lcy-Chr13:39180852 Lcy6g1843 Lcy-Chr6:38144011 1.79E-14 transposed
Lcy4g2145 Lcy-Chr4:47987260 Lcy6g1843 Lcy-Chr6:38144011 1.58E-09 transposed
Lcy6g1821 Lcy-Chr6:37371827 Lcy6g1843 Lcy-Chr6:38144011 9.60E-38 transposed
Lcy8g1350 Lcy-Chr8:40251945 Lcy6g1843 Lcy-Chr6:38144011 3.32E-56 transposed
Lcy6g1843 Lcy-Chr6:38144011 Lcy8g0366 Lcy-Chr8:11206595 1.10E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20321 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1843 K08065 - csv:101204640 279.641