Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1846 ATGGCATCCACGGCGGAGGAAACAACAACCATCACTTCCTCCTCCTCCGACGAGGACAACCAAGAACAACATGACTACGCTTACGCCGTGCAGCTACTTACCTTGTCGGTGCTGCCGATGACACTGCAAGCAGCCTTCGAGCTCGGCTTGTTTGAGATCTTGGCCAAGGCAGGCGACGGGGCCGAGCTCTCTCCGGTGGAGATAGCTGCTCAGATAACCACTACGAACCCCGATGCGGCGTCGATGGTTGATCGGATCTTAAGGCTTCTGGCCAGCCACTCGGTGGTGGGTTGCTCTGTGCCCATTGATGAACATGGGAATCTGCAGAGACTCTATAGCCTCACGCCGGTTTCTAAGTATTATGTTCGTAATGAAGATGGAGTGTCGTTGGGTCCTTCTTTATCGTTGATTCAAGATAAAGTCTTTCTCCATAGCTGGAGTGAGCTCAAGAACGCAGTTATTGAAGGAGGAGTTCCTTTCAACAGGGCTCATGGGGGAGTTCATGCCTTTGAATATCCAGGCTTGGATCCAAGATTTAACCAAGTCTTCAACACTGGAATGAAAAATCACACCACCATGTCTATCAAGAAAATTGTCAAGTCCTACAAGGGCTTTGAAAACATCAAGCAACTAGTTGATGTTGGTGGTGGCCTAGGGGTCACCCTTCAAATCATCACTTCTTCGTATCCTTCAATCAAAGGCATCAACTTCGACTTGCCTCATGTCATTCAGGATGCCCCTACCTATCTCGGTGTAGAACATGTAGGAGGAGACATGTTTGAGAAAGTTCCAAAGGGAGATGCTATTTTCATGAAGATCTGGTACGACTGCCGTTTCCTGAAGCTCTGTAATGTCTCAGACGCAGATCCAGCCGTTGCAGTGGATGCTCGCGAGTTTCCAGATCTCGCTGTCCGTGGGGGAGGAACAGAGCGAAAGCAGTCGAGGTTGAAGTTTTGGATACTTCATGATTGGAGCGATGAACATTGCGTGAAGTTGTTGAAAAATTGCTATGGTGCAATCCCAAATGATGGAAAAGTAATCGTGGCGGAGGGAGTGCTTCCAACCATGCCTGAGACCACAAATGCAATGAAATCCATCACCCAAGGCGATGTGCTTATGATGACTCAAAACCCAGGAGGAAAGGAGCGAACTCGTGATGAATTTAAAGCTCTCGCAACCAAAGCTGGGTTTAAACACATCATATTTGAGTGTTTTGTATGCAATCTTTGGATTATAGAGTTTTTAAAATGA 1251 47.48 MASTAEETTTITSSSSDEDNQEQHDYAYAVQLLTLSVLPMTLQAAFELGLFEILAKAGDGAELSPVEIAAQITTTNPDAASMVDRILRLLASHSVVGCSVPIDEHGNLQRLYSLTPVSKYYVRNEDGVSLGPSLSLIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPGLDPRFNQVFNTGMKNHTTMSIKKIVKSYKGFENIKQLVDVGGGLGVTLQIITSSYPSIKGINFDLPHVIQDAPTYLGVEHVGGDMFEKVPKGDAIFMKIWYDCRFLKLCNVSDADPAVAVDAREFPDLAVRGGGTERKQSRLKFWILHDWSDEHCVKLLKNCYGAIPNDGKVIVAEGVLPTMPETTNAMKSITQGDVLMMTQNPGGKERTRDEFKALATKAGFKHIIFECFVCNLWIIEFLK 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38353647 38360578 + Maker00027607 Lcy6g1846 636290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1846 416 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 416 IPR016461 GO:0008168(InterPro)
Lcy6g1846 416 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983(InterPro)
Lcy6g1846 416 Gene3D - 6 121 IPR036388 -
Lcy6g1846 416 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 127 272 IPR029063 -
Lcy6g1846 416 SUPERFAMILY Winged helix DNA-binding domain 20 124 IPR036390 -
Lcy6g1846 416 MobiDBLite consensus disorder prediction 1 20 - -
Lcy6g1846 416 MobiDBLite consensus disorder prediction 1 17 - -
Lcy6g1846 416 FunFam Caffeic acid 3-O-methyltransferase 4 121 - -
Lcy6g1846 416 Pfam O-methyltransferase domain 146 273 IPR001077 GO:0008171(InterPro)
Lcy6g1846 416 Pfam O-methyltransferase domain 319 398 IPR001077 GO:0008171(InterPro)
Lcy6g1846 416 Gene3D Vaccinia Virus protein VP39 122 416 IPR029063 -
Lcy6g1846 416 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 318 414 IPR029063 -
Lcy6g1846 416 PANTHER O-METHYLTRANSFERASE 316 402 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1846 Lcy-Chr6:38353647 Lcy6g1848 Lcy-Chr6:38523804 2.02E-126 dispersed
Lcy6g1846 Lcy-Chr6:38353647 Lcy6g1847 Lcy-Chr6:38476952 1.65E-200 tandem
Lcy6g0024 Lcy-Chr6:299599 Lcy6g1846 Lcy-Chr6:38353647 4.93E-111 transposed
Lcy4g0790 Lcy-Chr4:9535582 Lcy6g1846 Lcy-Chr6:38353647 1.34E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1846 K13066 - csv:101214916 567.385