Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1847 ATGCTCTTGCCCATCCGCCTACGGATATCACTACCATGGTTGGGCAACTCATCAACTGGGTCATCGCCTTCACATGATTCTCCGCTTGTAGTCCTCGCCTTCAGGTTGAAAGACACAAATGATTCACTGTTTGTGATCCATGATGAGGGTGACAAGTTGATCAATTTTCCAACAGAGAGCTCCGGCAAGGCGGCAATGGTTTCCAACGAAACAACCATGAGTTTCTCCTCCTCCAATGGCGACGACCAAGAACACGAACACTTCGCTTACGCCGTGCATCTGATTACCTTATCGATGCTGCCGATGACACTCCAAGCAGCCTTTGAGCTCGGTGTGTTTGAGATCTTGGCAAAGGCTGGCCATGGGGCCAAGCTCTCTCCGACCGAGATAGCGGCCGAGATAAACACGACCAACTCAGATGCAGCGTCGATGATTGATCGGATCCTGAGGCTTTTGGCTAGCCACTCGGTGGTCGCCTGCTCTGTGGTCACTGATGAACATGGAAATCTACAGAGACTCTATAGCCTTACGCCGGTTTCAAAGTATTATGTTCGCAATGAAGATGGTGTGTCGTTCGGTCCCGGCTTAGTGTTGGCTCAAGACAAAGTCTTTCTCGATTGCTGGAGTGAGTTGAAGAATGCAGTGATGGAAGGAGGAGTTGCTTTCAACAGGGCTCATGGAGGAACTCGTGTGTTTGAATACTCAGGCCTAGACCAAAGGTTTAACCAACTCTTCAACACTTCAATGAGGAACCACACCACCATGTCCATCAAGAAAATTGTAAAGTCCTACAAAGGATTTGCAAACCTCAAGCAGTTAGTTGATGTTGGTGGTGGCGTAGGGGCCAACCTTCAAATCATCACTTCTACGTACCCTTCAATCAAGGGCATCAATTTCGACTTACCTCATGTCGTTCGTGATGCCCCTTCCTATCCTGGTGTTGAACATGTAGGAGGAGACATGTTTGAGAGCGTTCCAAAAGGAGATGCTATTTTCATGAAGTGGATACTTCATGATTGGAGTGATGATCATTGCGTGAAGTTGTTGAAGAATTGCTATGCTGCAATTCCAAATGATGGAAAGGTAATCATAGTGGATGCAGTGCTTCCAACCACGATTGAGACCACAAGTGCAGTGAAATCCATCACCCAAGGTGATGTATTTATGATGACTCTAAATTCAGGAGGAAAGGAGCGAACTCGCGATGAATTTAAAGCTCTCGCAACCAAAGCTGGATTTAAACACATCATATTCCAATGTTATGTCTTTAATCTCTGGGTTATGGAGCTTTTTAAATGA 1299 46.34 MLLPIRLRISLPWLGNSSTGSSPSHDSPLVVLAFRLKDTNDSLFVIHDEGDKLINFPTESSGKAAMVSNETTMSFSSSNGDDQEHEHFAYAVHLITLSMLPMTLQAAFELGVFEILAKAGHGAKLSPTEIAAEINTTNSDAASMIDRILRLLASHSVVACSVVTDEHGNLQRLYSLTPVSKYYVRNEDGVSFGPGLVLAQDKVFLDCWSELKNAVMEGGVAFNRAHGGTRVFEYSGLDQRFNQLFNTSMRNHTTMSIKKIVKSYKGFANLKQLVDVGGGVGANLQIITSTYPSIKGINFDLPHVVRDAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDDHCVKLLKNCYAAIPNDGKVIIVDAVLPTTIETTSAVKSITQGDVFMMTLNSGGKERTRDEFKALATKAGFKHIIFQCYVFNLWVMELFK 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38476952 38485158 + Maker00027610 Lcy6g1847 636291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1847 432 Pfam Dimerisation domain 102 153 IPR012967 GO:0046983(InterPro)
Lcy6g1847 432 PANTHER O-METHYLTRANSFERASE 89 417 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Lcy6g1847 432 Pfam O-methyltransferase domain 208 414 IPR001077 GO:0008171(InterPro)
Lcy6g1847 432 Gene3D Vaccinia Virus protein VP39 184 432 IPR029063 -
Lcy6g1847 432 FunFam Caffeic acid O-methyltransferase 184 432 - -
Lcy6g1847 432 Gene3D - 70 183 IPR036388 -
Lcy6g1847 432 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 92 432 IPR016461 GO:0008168(InterPro)
Lcy6g1847 432 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 189 429 IPR029063 -
Lcy6g1847 432 FunFam Caffeic acid 3-O-methyltransferase 68 183 - -
Lcy6g1847 432 SUPERFAMILY Winged helix DNA-binding domain 82 186 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0790 Lcy-Chr4:9535582 Lcy6g1847 Lcy-Chr6:38476952 1.46E-37 dispersed
Lcy5g0340 Lcy-Chr5:3419444 Lcy6g1847 Lcy-Chr6:38476952 1.51E-65 dispersed
Lcy6g0024 Lcy-Chr6:299599 Lcy6g1847 Lcy-Chr6:38476952 3.72E-109 dispersed
Lcy6g1847 Lcy-Chr6:38476952 Lcy8g1524 Lcy-Chr8:41895017 3.72E-64 dispersed
Lcy6g1847 Lcy-Chr6:38476952 Lcy6g1849 Lcy-Chr6:38531549 1.24E-48 proximal
Lcy6g1846 Lcy-Chr6:38353647 Lcy6g1847 Lcy-Chr6:38476952 1.65E-200 tandem
Lcy6g1847 Lcy-Chr6:38476952 Lcy6g1848 Lcy-Chr6:38523804 3.97E-120 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1847 K13066 - csv:101214916 559.296