Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy6g1848 | ATGGTTTCCACAGCAGAAAAAACCATCTCTTCCATTGAGACCGACCAAGAACAAAATCAACACTTGGCTTACGCTATGCAACTGGCTACCTCATCAGCGCTGCCCATGACTCTCAAAGCTGCCTGCGAGCTTGGTGTATTTGAGATCTTGGCCAAGGCCGGCCATGGGGCCGAGCTCTCTCCGGCAAAGATAGTCGCTCAGATAACCACTAAGAACCCCGATGCGGCGTCGATGGTTGATCGGATCTTAAGGCTTTTGGCCAGCCACTCGGTGGTGGGCTGCTCTGTGGCCACTGACCAACATGGGAATTTGGAGAGACTCTATAGCCTCACGCCAGTTTCTAAGTATTATGTTCGTAATGAACATGGAGTGTCTTTGGGTCCGTTTGCATCGTTGACTCAAGATAAAGTCTTTCTCGATAGCTGGTATGAGCTGAAGAATGCAGTTGTGGAGGGAGGAATTCCGTTCAACAGGGCTCACGGGGGAGCGCATGCCTTTGAATACCCTAGCCTGGATCCAAGATTCAACCAAGTTTTCAACACTGCAATGGTGAATTATACGACCATGATTGTAAACAAGATTGTTGAGTCCTACAAGGGCTTTGCAAACCTCAAGCAATTGGTTGATGTTGGTGGTGGCCTTGGAGTCACCCTTCAAATCATTACTTCTGCATACCCTTCCATTAAGGGCATCAACTTCGACTTGCCTCATGTCATCCACCATGCCCCATCCTATCAAGTGGCGGCCGGTAGTCGGAGGTCGACGGTGGCATCTGGTAGTCAAAGGTCAACTGTAGCAGCTGGTCGACGGAGTCAGAGGTCGACGGTGGCGGCCGGTAGTCAGAGGTCGACGGTGGTGGCCGGTAGTCAAAGGTCGACGGTGGCGGTCGTTCGGTGGAGGTCGGCGGCTGCCGGTAGTCAGAGGTCGACGGCGTCCGATAGTCTGAGGTCGACGGTAGTGGTCAATCGACGGAGGCGGTCAGCAGGGGTCGACGGCGCCCGGTAG | 1005 | 53.33 | MVSTAEKTISSIETDQEQNQHLAYAMQLATSSALPMTLKAACELGVFEILAKAGHGAELSPAKIVAQITTKNPDAASMVDRILRLLASHSVVGCSVATDQHGNLERLYSLTPVSKYYVRNEHGVSLGPFASLTQDKVFLDSWYELKNAVVEGGIPFNRAHGGAHAFEYPSLDPRFNQVFNTAMVNYTTMIVNKIVESYKGFANLKQLVDVGGGLGVTLQIITSAYPSIKGINFDLPHVIHHAPSYQVAAGSRRSTVASGSQRSTVAAGRRSQRSTVAAGSQRSTVVAGSQRSTVAVVRWRSAAAGSQRSTASDSLRSTVVVNRRRRSAGVDGAR | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 38523804 | 38529667 | + | Maker00027645 | Lcy6g1848 | 636292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy6g1848 | 334 | FunFam | Caffeic acid 3-O-methyltransferase | 3 | 117 | - | - | |
Lcy6g1848 | 334 | Pfam | Dimerisation domain | 36 | 87 | IPR012967 | GO:0046983(InterPro) | |
Lcy6g1848 | 334 | SUPERFAMILY | Winged helix DNA-binding domain | 16 | 120 | IPR036390 | - | |
Lcy6g1848 | 334 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 26 | 334 | IPR016461 | GO:0008168(InterPro) | |
Lcy6g1848 | 334 | Pfam | O-methyltransferase domain | 142 | 261 | IPR001077 | GO:0008171(InterPro) | |
Lcy6g1848 | 334 | Gene3D | - | 1 | 117 | IPR036388 | - | |
Lcy6g1848 | 334 | PANTHER | O-METHYLTRANSFERASE | 22 | 244 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
Lcy6g1848 | 334 | MobiDBLite | consensus disorder prediction | 250 | 283 | - | - | |
Lcy6g1848 | 334 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 124 | 251 | IPR029063 | - | |
Lcy6g1848 | 334 | Gene3D | Vaccinia Virus protein VP39 | 118 | 276 | IPR029063 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy6g1846 | Lcy-Chr6:38353647 | Lcy6g1848 | Lcy-Chr6:38523804 | 2.02E-126 | dispersed | |
Lcy6g1847 | Lcy-Chr6:38476952 | Lcy6g1848 | Lcy-Chr6:38523804 | 3.97E-120 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy6g1848 | K13066 | - | csv:101205290 | 357.836 |