Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1848 ATGGTTTCCACAGCAGAAAAAACCATCTCTTCCATTGAGACCGACCAAGAACAAAATCAACACTTGGCTTACGCTATGCAACTGGCTACCTCATCAGCGCTGCCCATGACTCTCAAAGCTGCCTGCGAGCTTGGTGTATTTGAGATCTTGGCCAAGGCCGGCCATGGGGCCGAGCTCTCTCCGGCAAAGATAGTCGCTCAGATAACCACTAAGAACCCCGATGCGGCGTCGATGGTTGATCGGATCTTAAGGCTTTTGGCCAGCCACTCGGTGGTGGGCTGCTCTGTGGCCACTGACCAACATGGGAATTTGGAGAGACTCTATAGCCTCACGCCAGTTTCTAAGTATTATGTTCGTAATGAACATGGAGTGTCTTTGGGTCCGTTTGCATCGTTGACTCAAGATAAAGTCTTTCTCGATAGCTGGTATGAGCTGAAGAATGCAGTTGTGGAGGGAGGAATTCCGTTCAACAGGGCTCACGGGGGAGCGCATGCCTTTGAATACCCTAGCCTGGATCCAAGATTCAACCAAGTTTTCAACACTGCAATGGTGAATTATACGACCATGATTGTAAACAAGATTGTTGAGTCCTACAAGGGCTTTGCAAACCTCAAGCAATTGGTTGATGTTGGTGGTGGCCTTGGAGTCACCCTTCAAATCATTACTTCTGCATACCCTTCCATTAAGGGCATCAACTTCGACTTGCCTCATGTCATCCACCATGCCCCATCCTATCAAGTGGCGGCCGGTAGTCGGAGGTCGACGGTGGCATCTGGTAGTCAAAGGTCAACTGTAGCAGCTGGTCGACGGAGTCAGAGGTCGACGGTGGCGGCCGGTAGTCAGAGGTCGACGGTGGTGGCCGGTAGTCAAAGGTCGACGGTGGCGGTCGTTCGGTGGAGGTCGGCGGCTGCCGGTAGTCAGAGGTCGACGGCGTCCGATAGTCTGAGGTCGACGGTAGTGGTCAATCGACGGAGGCGGTCAGCAGGGGTCGACGGCGCCCGGTAG 1005 53.33 MVSTAEKTISSIETDQEQNQHLAYAMQLATSSALPMTLKAACELGVFEILAKAGHGAELSPAKIVAQITTKNPDAASMVDRILRLLASHSVVGCSVATDQHGNLERLYSLTPVSKYYVRNEHGVSLGPFASLTQDKVFLDSWYELKNAVVEGGIPFNRAHGGAHAFEYPSLDPRFNQVFNTAMVNYTTMIVNKIVESYKGFANLKQLVDVGGGLGVTLQIITSAYPSIKGINFDLPHVIHHAPSYQVAAGSRRSTVASGSQRSTVAAGRRSQRSTVAAGSQRSTVVAGSQRSTVAVVRWRSAAAGSQRSTASDSLRSTVVVNRRRRSAGVDGAR 334
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 38523804 38529667 + Maker00027645 Lcy6g1848 636292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1848 334 FunFam Caffeic acid 3-O-methyltransferase 3 117 - -
Lcy6g1848 334 Pfam Dimerisation domain 36 87 IPR012967 GO:0046983(InterPro)
Lcy6g1848 334 SUPERFAMILY Winged helix DNA-binding domain 16 120 IPR036390 -
Lcy6g1848 334 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 334 IPR016461 GO:0008168(InterPro)
Lcy6g1848 334 Pfam O-methyltransferase domain 142 261 IPR001077 GO:0008171(InterPro)
Lcy6g1848 334 Gene3D - 1 117 IPR036388 -
Lcy6g1848 334 PANTHER O-METHYLTRANSFERASE 22 244 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Lcy6g1848 334 MobiDBLite consensus disorder prediction 250 283 - -
Lcy6g1848 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 251 IPR029063 -
Lcy6g1848 334 Gene3D Vaccinia Virus protein VP39 118 276 IPR029063 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1846 Lcy-Chr6:38353647 Lcy6g1848 Lcy-Chr6:38523804 2.02E-126 dispersed
Lcy6g1847 Lcy-Chr6:38476952 Lcy6g1848 Lcy-Chr6:38523804 3.97E-120 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1848 K13066 - csv:101205290 357.836