Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1864 ATGGGGACGTCCAACCTTAAAATCCCTCCCCAAAGCTCATCAAGTGACAGTAACCAATCATTTCCTTCAAGGGCTTGCTGTGTTGTTGTTGAGTACCTTCCAGGTGGCACACTAAAGAGCTTTTTAATCAGAAATAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTAGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACAGAGAATGTGCTACTAGTTGCTCAGAGGACTCTGAAAATTGTTGATTTTGGCGTTGCTCAAGTTGAACATAATCCAAGGGACATGACTGGAGAGACTGGCACCCTTGGTTAA 354 40.4 MGTSNLKIPPQSSSSDSNQSFPSRACCVVVEYLPGGTLKSFLIRNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLLVAQRTLKIVDFGVAQVEHNPRDMTGETGTLG 117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38878132 38878884 + Maker00027634 Lcy6g1864 636308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1864 117 Gene3D Transferase(Phosphotransferase) domain 1 11 117 - -
Lcy6g1864 117 ProSitePatterns Serine/Threonine protein kinases active-site signature. 74 86 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy6g1864 117 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 116 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Lcy6g1864 117 SUPERFAMILY Protein kinase-like (PK-like) 24 116 IPR011009 -
Lcy6g1864 117 Pfam Protein kinase domain 24 116 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1864 117 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy6g1864 117 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1864 Lcy-Chr6:38878132 Lcy5g2226 Lcy-Chr5:45283082 9.05E-21 dispersed
Lcy6g1864 Lcy-Chr6:38878132 Lcy3g1584 Lcy-Chr3:42991060 3.58E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66046 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1864 - - - 0.0