Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1866 ATGGCTGCCTTCAATCTTTCTCCAAATTTTCTTTTTCTCGTGCAGTCTTACATTGTTTACTTGGGGTCGCATTCTCATGGTTCGCGCACTTTGTCGTTAAATCCTCAACATGTACTACAGTCTCATCATGATTTATTAGCATCAGTGTGTGGAAGCAAAAAGATAGCCAGAGAAGCCATTTTCTACTCATACAACAGACACATCAATGGCTTTGCTGCTATGCTTGATGAAAAGGAAGCAGCAGATCTTGCAAGTGTTTGGCCAGAATCTAAGAGCTTTAGTGATGATGGGTATGGACCTGTCCCCTCAAGGAAGTTGATTGGAGCAAGATTCTTCAACAAAGGCTATGGTGAACTCAGTGTGACCTTCAATTCTTCAAGAGACCATGATGGTCATGGAACCCACACTTTATCCATAGCTGGTGGTAATTTCATCCCTGGAGCTAATGTTTTGGGCATAGGCAATGGAACTGTCAAAGGTGGCTCCCCTCGAGCCCGTGTCGTGTCCTACAAGGTTTGTTGGCCAGCACCAGCAGAAATTGGTGAGTGTATGGATCCAAATAACCTGGCTGCCTTTGATGCTGCAATTAGCGATGGCGTTGACGTTCTCTCGGTTTCCATCGGTGGAGAGCCCAAAGAGTTTTTTAATGATGCCATCTCTGTAGGAGCCTTCCATGCAGTTCAACAAGGCATTGTTGTTGTTTGCTCGGCTGGAAACTTTGGACCAACTCCTGGGACTGTATCAAATGTGTCACCATGGATTCTAACTGTTGGAGCTAGTACCATAGATAGGGATTTCACCAACTTTGTGGTTCTTGGGAACAATAAGAAACTCAAGGGTACAAGCTTATCCTACAAGGCACTGCCATTTAACAAGTTCTACCCTTTAATCAATGCTGTGGATGCAAAAGCCAACAATGTCTCTAACAGTGATGCGGAAACTTGTAGTCCGGGATCGCTTGATGCCACGAAGTTGACAGGGAAGATTGTGGTTTGCCTTCGAGGGGGTATTGCAAGAGTGGACAAGGGCTATGTAGTTGCCAAAGCAGGGGCTGTTGGGATGATTTTGGTTAACGATGAGAAAAGTGGGAATGCAATTATATCTGATATGCACATCCTTCCAGCTACCCATGTAACCTACGATGACAGCATATCCATCTTCCAATACATCAATTCTACAAAGACACCAATGGCTTACATCAGTTCTGTCACGCCAGAACTAGAAATCAAACCATCTCCAGTAATGGCTGCTTTCTCATCAAGAGGCCCTAGTATAATCGAGGAGTCAATCCTTAAGCCTGATATAACAGCACCGGGAGTGAATATAATGGCAGCTTACCCCGATGGAATTCCATTGGCAAATATAGATTCTGACGATCATCGAGCTCCTTTTAAGATAGACTCTGGCACATCCATGGCCTGCCCCCATGTTGCTGGCGTTGCAGGTCTTCTCAAAGCCCTAAATCCCAAATGGAGTCCAGCTGCCATTAAATCTGCAATCATGACCACAGCGAAAACAGCAGACAACACTTTACATCCAATTCTAGACTACACCGGATTCCAAGCAACTCCATTGGCATATGGCGCCGGACATATTCATCCAAATAGTGCAATGGACCCTGGCCTCGTTTACGACATTACAATCGATGATTACCTCAATTTCTTGTGTGCAAGAGGCTACAACGAAACGGAAATCCAGATAATATCCAAGAAGTTGTTTGTTTGCAATCAGTCATTCAAAGTGACGGATCTGAATTACCCTTCGATCTCAGTCACGGATCTGAAAACGGGCCCTGTGACGATCAATCGAAAGTTGAAGAACGTGGGAAGTCCAGGGACGTATTTTGCTCGAGTGAAGGCGCCTTCGGAAGTTTCCATCACCATTGATCCAAGCTCACTGCAATTTACTGCCATGGATGAAGAGAAGAGCTTCAAGGTGTTGTTGCAGAGCACTGGAAAGGGAAGGCAGCGGGGTCATGTGTTTGGATCATTAGAATGGTCTGATGGTAAACACAATGTTCAAAGCCCCATTGCTGTGAATTTAGGGGAATAG 2052 45.03 MAAFNLSPNFLFLVQSYIVYLGSHSHGSRTLSLNPQHVLQSHHDLLASVCGSKKIAREAIFYSYNRHINGFAAMLDEKEAADLASVWPESKSFSDDGYGPVPSRKLIGARFFNKGYGELSVTFNSSRDHDGHGTHTLSIAGGNFIPGANVLGIGNGTVKGGSPRARVVSYKVCWPAPAEIGECMDPNNLAAFDAAISDGVDVLSVSIGGEPKEFFNDAISVGAFHAVQQGIVVVCSAGNFGPTPGTVSNVSPWILTVGASTIDRDFTNFVVLGNNKKLKGTSLSYKALPFNKFYPLINAVDAKANNVSNSDAETCSPGSLDATKLTGKIVVCLRGGIARVDKGYVVAKAGAVGMILVNDEKSGNAIISDMHILPATHVTYDDSISIFQYINSTKTPMAYISSVTPELEIKPSPVMAAFSSRGPSIIEESILKPDITAPGVNIMAAYPDGIPLANIDSDDHRAPFKIDSGTSMACPHVAGVAGLLKALNPKWSPAAIKSAIMTTAKTADNTLHPILDYTGFQATPLAYGAGHIHPNSAMDPGLVYDITIDDYLNFLCARGYNETEIQIISKKLFVCNQSFKVTDLNYPSISVTDLKTGPVTINRKLKNVGSPGTYFARVKAPSEVSITIDPSSLQFTAMDEEKSFKVLLQSTGKGRQRGHVFGSLEWSDGKHNVQSPIAVNLGE 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38925391 38928627 + Maker00027642 Lcy6g1866 636310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1866 683 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 86 677 IPR045051 -
Lcy6g1866 683 FunFam Subtilisin-like protease SBT1.5 555 682 - -
Lcy6g1866 683 Pfam PA domain 311 383 IPR003137 -
Lcy6g1866 683 CDD PA_subtilisin_like 270 400 - -
Lcy6g1866 683 ProSitePatterns Serine proteases, subtilase family, serine active site. 469 479 IPR023828 -
Lcy6g1866 683 Gene3D - 555 681 - -
Lcy6g1866 683 Gene3D - 263 407 - -
Lcy6g1866 683 CDD Peptidases_S8_3 86 504 IPR034197 -
Lcy6g1866 683 ProSiteProfiles Serine proteases, subtilase domain profile. 1 538 - -
Lcy6g1866 683 FunFam subtilisin-like protease SBT1.5 263 406 - -
Lcy6g1866 683 Gene3D Peptidase S8/S53 domain 86 551 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1866 683 Pfam Peptidase inhibitor I9 16 84 IPR010259 -
Lcy6g1866 683 FunFam Subtilisin-like protease SBT5.3 13 89 - -
Lcy6g1866 683 Pfam Fibronectin type-III domain 583 679 IPR041469 -
Lcy6g1866 683 SUPERFAMILY PA domain 322 393 IPR046450 -
Lcy6g1866 683 PRINTS Subtilisin serine protease family (S8) signature 128 141 IPR015500 -
Lcy6g1866 683 PRINTS Subtilisin serine protease family (S8) signature 468 484 IPR015500 -
Lcy6g1866 683 Pfam Subtilase family 121 511 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1866 683 SUPERFAMILY Subtilisin-like 104 542 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1866 Lcy-Chr6:38925391 Lcy6g1881 Lcy-Chr6:39452459 1.16E-302 dispersed
Lcy6g1866 Lcy-Chr6:38925391 Lcy6g1869 Lcy-Chr6:39002815 0 proximal
Lcy6g1866 Lcy-Chr6:38925391 Lcy9g0404 Lcy-Chr9:11378610 1.94E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1866 - - - 0.0