Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy6g1869 | ATGGATGCCTCCAACTTTTCTCTATTTCATTTGATATTCTTTCTTTTCTTTGTTCTGCAAACATCTACCATTGCCACCAAAAAGTCATACATTGTATACCTCGGTTCACATTCGCATGGTTTGAGTCCTACCTCATTGGATCTTGAACGTGCTACAGAATCTCATTATGACTTATTGGGATCCATGTTGGGAAGCAAAGAGATAGCCAAAGAATCCATTCTCTACTCATACAACAGATATATTAATGGCTTTGCTGCCATGCTCGATGAGAAACAAGCAACAGAAGTTACAAGAAATCCAGATGTGATTTCGGTATTTGAAAGCCAGGAAAGACAATTGCACACAACAAGATCATGGAATTTTCTCGGAATAGAAAGAAAAGAAGCAATTCCTTCAAAATCCATTTGGAATGTTACGAGGTTTGGTGAGGATACAATTATAGCTAACTTTGACACAGGTGTTTGGCCAGAATCTAAGAGCTTCAGTGACGAAGGATATGGGCCTGTCCCTTCAAGGAAGCTAATTGGAGCAAGGTTCTATAACAATGCCTATGGTATGCTCAACGTCAGCTTTAATTCTTCAAGAGACCATGATGGCCATGGAACCCATACTTTATCCACAGCTGGTGGCAATTTTGTCTCTGGAGCTAATGTTTTTGGCAATGGAAATGGAACTGCCAAAGGTGGCTCACCTCGAGCCCGTGTTGCGTCCTACAAGGTCTGTTGGCCAGCAGAAGGTGGAGGGTGTTTTGACCCAGATATCTTAGCCGCCTTTGAAGATGCCATTGGCGACGGCGTTGATGTTATCTCAGTTTCTCTAGGTGGATTTGCCTCCGACTTTCTGAATGATGCGTTATCCATAGGAGCTTTCCATGCAGTTCAACAAGGCATCGTTGTCGTTTGCTCGTCTGGGAACTCTGGACCAGCTCTTAGAACTGTATCAAATGTGTCACCATGGATGTTAACTGTTGGAGCTAGTACCATGGATAGAGATTTTACCAATTTTGTGGTCCTTGGGAACAAAAAGAAACTCAAGGGTGCAAGCCTTTCTTCTAAGGCATTGCCATTAAACAAGTTCTACCCCTTAATCAGTGGTGTGGATGCGAAAGCCGACAATGTCTCCAATCGTGATGCGGAAATTTGTGATGATGGAACGCTTGATTCCACGAAGTTGAATGGGAAGATTGTGGTATGCCTTCGAGGGGTTAATTCAAGAGTGGCCAAAAGTTTTGTGGCCGCTCAGGCAGGGGCTGTTGGGATAATTCTAGTTAACGATGAGCAGAGTGGAAATGAGATTTTAGCTGATCCACACATCCTTCCAGCTTCTAATGTAAACTATAAAGATAGCTTATATATCTCCCAATACATCGACTCTACAACGACACCAATGGCTTACATCAGTTCTGTGAGGACAACACTTGGAGTCAAGCCAGCCCCAGTAATGGCTGGTTTCTCAGCAAGAGGTCCTAATACAATCGAGGAGTCAATCCTAAAGCCTGATATAATAGCACCAGGTGTGAATATAATTGCGGCTCACCCCGATGGAATACCATTGACAAATGTACCAGCTGATGATCGTCTAGTTCCTTTTAAGCTAGATTCTGGCACTTCTATGGCCTGTCCCCATGTTGCTGGGATTGTAGGTCTCCTCAAAACCCTAAATCCCAAATGGAGTCCAGCAGCCATTCAATCTGCAATCATGACCACAGCTAAAACAAGAGACAACAACTTGCATCCAATTCTAGATACCACCGGGCTCAAAGCAACTCCATTGGCTTACGGCGCAGGACATGTTCAACCAAACAGTGCGATGGACCCTGGCCTTGTTTACGACATTACAATCGACGATTACCTCAATTTCTTGTGTGCTCGAGGCTACAATGCAACCCAAATCAACAAATTCTCCAATAAGACATTCGTTTGCGATCAGTCATTCAAAGTGACAGATCTAAATTACCCTTCGATCTCAGTCACAGATATTAAAACGGGCCCTGTGACGATCAATCGAAAGGTGAAGAACGTGGGAAGTCCAGGGACATATGTTGCTCGAGTGAAGGCGCCTTTGGAAGTTTCAATCGCCATTGAGCCAAGTACATTGCAATTTACTACCATGGATGAAGAGAAGAGCTTCAAAGTTATGTTGCAGAGCACTGGAAAGGGAAATCCGCAGGGTTATGTGTTTGGGACATTGACATGGTCAGATGGCAAACACAAAGTTAGAAGTTCCATTGTTGTTAATATGGGGAAATAG | 2250 | 43.56 | MDASNFSLFHLIFFLFFVLQTSTIATKKSYIVYLGSHSHGLSPTSLDLERATESHYDLLGSMLGSKEIAKESILYSYNRYINGFAAMLDEKQATEVTRNPDVISVFESQERQLHTTRSWNFLGIERKEAIPSKSIWNVTRFGEDTIIANFDTGVWPESKSFSDEGYGPVPSRKLIGARFYNNAYGMLNVSFNSSRDHDGHGTHTLSTAGGNFVSGANVFGNGNGTAKGGSPRARVASYKVCWPAEGGGCFDPDILAAFEDAIGDGVDVISVSLGGFASDFLNDALSIGAFHAVQQGIVVVCSSGNSGPALRTVSNVSPWMLTVGASTMDRDFTNFVVLGNKKKLKGASLSSKALPLNKFYPLISGVDAKADNVSNRDAEICDDGTLDSTKLNGKIVVCLRGVNSRVAKSFVAAQAGAVGIILVNDEQSGNEILADPHILPASNVNYKDSLYISQYIDSTTTPMAYISSVRTTLGVKPAPVMAGFSARGPNTIEESILKPDIIAPGVNIIAAHPDGIPLTNVPADDRLVPFKLDSGTSMACPHVAGIVGLLKTLNPKWSPAAIQSAIMTTAKTRDNNLHPILDTTGLKATPLAYGAGHVQPNSAMDPGLVYDITIDDYLNFLCARGYNATQINKFSNKTFVCDQSFKVTDLNYPSISVTDIKTGPVTINRKVKNVGSPGTYVARVKAPLEVSIAIEPSTLQFTTMDEEKSFKVMLQSTGKGNPQGYVFGTLTWSDGKHKVRSSIVVNMGK | 749 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 39002815 | 39006321 | + | Maker00027648 | Lcy6g1869 | 636313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy6g1869 | 749 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 30 | 743 | IPR045051 | - | |
| Lcy6g1869 | 749 | FunFam | Subtilisin-like protease SBT1.5 | 621 | 748 | - | - | |
| Lcy6g1869 | 749 | SUPERFAMILY | PA domain | 388 | 430 | IPR046450 | - | |
| Lcy6g1869 | 749 | FunFam | Subtilisin-like protease SBT5.3 | 18 | 114 | - | - | |
| Lcy6g1869 | 749 | Pfam | PA domain | 377 | 449 | IPR003137 | - | |
| Lcy6g1869 | 749 | CDD | PA_subtilisin_like | 336 | 466 | - | - | |
| Lcy6g1869 | 749 | Pfam | Peptidase inhibitor I9 | 29 | 114 | IPR010259 | - | |
| Lcy6g1869 | 749 | Pfam | Subtilase family | 142 | 576 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
| Lcy6g1869 | 749 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 118 | 604 | - | - | |
| Lcy6g1869 | 749 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 535 | 545 | IPR023828 | - | |
| Lcy6g1869 | 749 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 18 | 114 | IPR037045 | - | |
| Lcy6g1869 | 749 | Gene3D | - | 329 | 473 | - | - | |
| Lcy6g1869 | 749 | CDD | Peptidases_S8_3 | 112 | 570 | IPR034197 | - | |
| Lcy6g1869 | 749 | SUPERFAMILY | Subtilisin-like | 113 | 608 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Lcy6g1869 | 749 | Pfam | Fibronectin type-III domain | 649 | 745 | IPR041469 | - | |
| Lcy6g1869 | 749 | Gene3D | - | 621 | 747 | - | - | |
| Lcy6g1869 | 749 | Gene3D | Peptidase S8/S53 domain | 144 | 617 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Lcy6g1869 | 749 | PRINTS | Subtilisin serine protease family (S8) signature | 196 | 209 | IPR015500 | - | |
| Lcy6g1869 | 749 | PRINTS | Subtilisin serine protease family (S8) signature | 142 | 161 | IPR015500 | - | |
| Lcy6g1869 | 749 | PRINTS | Subtilisin serine protease family (S8) signature | 534 | 550 | IPR015500 | - | |
| Lcy6g1869 | 749 | FunFam | subtilisin-like protease SBT1.5 | 329 | 473 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy6g1869 | Lcy-Chr6:39002815 | Lcy6g1894 | Lcy-Chr6:39682684 | 0 | dispersed | |
| Lcy6g1866 | Lcy-Chr6:38925391 | Lcy6g1869 | Lcy-Chr6:39002815 | 0 | proximal |
Pathway information