Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1880 ATGGAGCCTTTCAATCCATCTAAATTGCTTCTGTTGTTCTCTCTTTTTGCTCTGTTGCAAACATCCACCACTGCCACCAAGAAGGCAAGTCAAATGCTCACTCATGAAAAGTGCTTTTTCAGAAAAGTTGGATATTCTTATATTGTTTACTTGGGATCACATTCACATGGGTTGAATCCTTCTGAAATTGATGTCCAAATTGCAACAGAATCTCACTACAATTTACTTGGCTCCTTCTTAGGAAGCAATGAAGCAGCTGAAGAAGCCATTTTCTACTCATATAATAGACATATCAATGGCTTTGCTGCTGTGCTTGATCAGAAAGTTGCAGAAGATCTAGCAAAACATCCTAATGTGATATCAGTACTGGAAGACAAGGCAAGAAAACTGCACACAACAGGTTCATGGAGCTTTCTTGGCCTAGAGAATGAGAATGATGGTGGAATTCCTCCAAACTCTCTTTGGAATCTTGCAAGTTTTGGTGAATCTACCATCATTGCCAATCTTGACACAGGTGTCTGGCCAGAATCAAAGAGCTTTGATGATAAAGGATATGGACCTATCCCAACAAGGTGGAAGGGTAGTTGTGAAGGTGGCTCCAACTTCCATTGCAACAGGAAGCTGATAGGAGCAAGGTATTTCAACAAAGGGTACGGATCCGTCGCAGGACCTCTGAATGCAAGCTTTGAATCAGCAAGGGACCATGAAGGCCACGGAACGCACACTCTATCCACAGCTGGAGGGAATTTCGTTTCAGGAGTAAGCGTTTTTGGGAATGGTTATGGCACTGCAAAAGGTGGTTCGCCGAAAGCGCTTGTTGCTGCCTATAAAGTGTGCTGGCCTCCACTGTTATTTTTTGGCGAGTGTTTTGAGACCGACATTCTAGCTGGTATTGAAGCTGCCATTAGTGATGGAGTTGATGTTCTGTCGGTTTCACTCGGTGGAGGTATCGTAGATTTTGTCGATGATGCTTTAGCCATAGGGGCCTTCCATGCTGTTCAGCAGGGCATCACTGTTGTTTGCTCTGCTGGAAACTCTGGACCGGCTCCTGGCTCTGTCTCAAATGTGGCACCATGGATTTTAACTGTGGGAGCTAGCACAACCGATAGGCTTTTTACCAGTTATGTGGCCCTCGGAAGCAAGAAGCATATCAAGGGTACAAGTCTTTCTGACAAAACAATACCAGCTCAGAGGTTCTATCCATTGATCAGTTCTCTAGATGCAAAAGCCAAGAATGTCTCTAACAAGGACTCCCTATTGTGTGAAAAAGAGTCTCTTGATCCTGAAAAGGTAAGAGGGAAGATTGTGGTTTGCCTTAGAGGGGACAATGCAAGAGTGGACAAGGGTTATGTGGTTGCTCAAGCAGGTGGTGTTGGGATGATTCTAGCTAACAGTGAGGAAAATGGGGATGAACTTTTAGCTGATCCACATTTCCTCCCTGCTTCCCATATTACCTATACTGATGGTCAATCAGTCTACCAATACATCAACTCTACCAAAATTCCAATGGCTTTCATGACTCGCGTAAGGACAGAGGTGGGAGTGAAACCAGCACCATTTATGGCTGAATTCTCATCAAGAGGACCCAACGAAATTGAGGCTTCAATACTCAAGCCTGATATAACAGCGCCAGGTGTGAGTATAATAGCGGCTTTTGCCGGAGATTTATCACCAACCGGTGAAGATCTTGATACACGTCGGATTCCATATATGGCAGAATCTGGCACTTCCATGTCATGCCCCCATGTTTCTGGGATCGTTGGCCTTCTCAGAACCCTTTATCCAAAGTGGAGTCCAGCCGCTATCAGATCTGCAATCATGACCACAGCTGAAACGAAAGCCAACGACTTAAACCCAATACTAAGCTCAAGCCAGGTGAAAGCAACCCCATTCGCGTACGGAGCAGGACATGTGAATCCAAACAGAGCCGCAAACCCAGGCCTCGTCTACGACCTGACGACCAAGGACTACTTGAACTTCTTATGCGCTCACGGCTACAACGAAACCCAGCTCAAGCAATTCTCCAACGCCACATTCGCCTGTTCCAAGACCTTCAAAGTCACAGATCTCAACTACCCATCCATCTCCATACCCGATCTGAAAGTGGGGACGGCCAAAGTCAAAAGAAGAGTGAAGAATGTGGGGAGTCCGGGCACTTACGTTGCTCAGGTCAAGGCACCGCCGGGCGTCTCGGTCTCGGTCGAGCCAAGCAGCTTGAAGTTCACCGGAGTTGGTGAGGAGAAGAGCTTCAGAGTTGTGCTGAAGAGAGTGTCGAATGATTATCATCGAGGCTATGTGTTCGGGAGACTCGCTTGGACTGATGGGAAGCATCGGGTTAGAAGTCCGATTGTGGTGAATTTGGGATGA 2367 46.39 MEPFNPSKLLLLFSLFALLQTSTTATKKASQMLTHEKCFFRKVGYSYIVYLGSHSHGLNPSEIDVQIATESHYNLLGSFLGSNEAAEEAIFYSYNRHINGFAAVLDQKVAEDLAKHPNVISVLEDKARKLHTTGSWSFLGLENENDGGIPPNSLWNLASFGESTIIANLDTGVWPESKSFDDKGYGPIPTRWKGSCEGGSNFHCNRKLIGARYFNKGYGSVAGPLNASFESARDHEGHGTHTLSTAGGNFVSGVSVFGNGYGTAKGGSPKALVAAYKVCWPPLLFFGECFETDILAGIEAAISDGVDVLSVSLGGGIVDFVDDALAIGAFHAVQQGITVVCSAGNSGPAPGSVSNVAPWILTVGASTTDRLFTSYVALGSKKHIKGTSLSDKTIPAQRFYPLISSLDAKAKNVSNKDSLLCEKESLDPEKVRGKIVVCLRGDNARVDKGYVVAQAGGVGMILANSEENGDELLADPHFLPASHITYTDGQSVYQYINSTKIPMAFMTRVRTEVGVKPAPFMAEFSSRGPNEIEASILKPDITAPGVSIIAAFAGDLSPTGEDLDTRRIPYMAESGTSMSCPHVSGIVGLLRTLYPKWSPAAIRSAIMTTAETKANDLNPILSSSQVKATPFAYGAGHVNPNRAANPGLVYDLTTKDYLNFLCAHGYNETQLKQFSNATFACSKTFKVTDLNYPSISIPDLKVGTAKVKRRVKNVGSPGTYVAQVKAPPGVSVSVEPSSLKFTGVGEEKSFRVVLKRVSNDYHRGYVFGRLAWTDGKHRVRSPIVVNLG 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39409989 39415935 - Maker00015983 Lcy6g1880 636324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1880 788 Gene3D - 369 513 - -
Lcy6g1880 788 ProSiteProfiles Serine proteases, subtilase domain profile. 135 644 - -
Lcy6g1880 788 FunFam Subtilisin-like protease SBT1.5 661 788 - -
Lcy6g1880 788 FunFam Subtilisin-like protease SBT5.3 39 131 - -
Lcy6g1880 788 SUPERFAMILY Protease propeptides/inhibitors 46 128 - -
Lcy6g1880 788 PRINTS Subtilisin serine protease family (S8) signature 234 247 IPR015500 -
Lcy6g1880 788 PRINTS Subtilisin serine protease family (S8) signature 574 590 IPR015500 -
Lcy6g1880 788 PRINTS Subtilisin serine protease family (S8) signature 161 180 IPR015500 -
Lcy6g1880 788 Pfam PA domain 417 491 IPR003137 -
Lcy6g1880 788 Pfam Peptidase inhibitor I9 46 131 IPR010259 -
Lcy6g1880 788 Pfam Subtilase family 161 636 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1880 788 Gene3D - 661 787 - -
Lcy6g1880 788 FunFam subtilisin-like protease SBT1.5 369 513 - -
Lcy6g1880 788 FunFam Subtilisin-like protease SBT1.5 163 394 - -
Lcy6g1880 788 Pfam Fibronectin type-III domain 689 785 IPR041469 -
Lcy6g1880 788 SUPERFAMILY PA domain 428 500 IPR046450 -
Lcy6g1880 788 CDD Peptidases_S8_3 129 610 IPR034197 -
Lcy6g1880 788 CDD PA_subtilisin_like 375 505 - -
Lcy6g1880 788 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 47 784 IPR045051 -
Lcy6g1880 788 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 42 131 IPR037045 -
Lcy6g1880 788 ProSitePatterns Serine proteases, subtilase family, serine active site. 575 585 IPR023828 -
Lcy6g1880 788 Gene3D Peptidase S8/S53 domain 164 657 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1880 788 SUPERFAMILY Subtilisin-like 131 648 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g1327 Lcy-Chr5:31636800 Lcy6g1880 Lcy-Chr6:39409989 4.71E-289 dispersed
Lcy6g1880 Lcy-Chr6:39409989 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1880 Lcy-Chr6:39409989 Lcy6g1881 Lcy-Chr6:39452459 0 tandem
Lcy1g0235 Lcy-Chr1:2117886 Lcy6g1880 Lcy-Chr6:39409989 4.59E-174 transposed
Lcy4g0408 Lcy-Chr4:4986760 Lcy6g1880 Lcy-Chr6:39409989 0 transposed
Lcy6g1880 Lcy-Chr6:39409989 Lcy9g0548 Lcy-Chr9:17151572 1.24E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1880 - - - 0.0