Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1881 ATGTTGTGTTATAAAGCTGAAAAGAATAGAGGGAGTTCATCATTCATCATTCATCATTCATCATTCACAAGTAAAAAGCCATGGAGGCTTTCAATCAATCTCCATTGCTTCTGTTGTTCTTTCTTTTTGCGCTGTTGCAAACGTCCACCATTGCCACCAAGAAGGCAAGCCATGATCATTCATGAATCTGCTTTTAAGAATAAATATGGCTATATTTTTAATTGTCCATCTCAAATGAGTTTCTTCTGTTCTAAGGAAGCAATTTTCTACTCCTACAACAGACATATCAATGGCTTTGCAGCCATGCTTGATCAGAAAGCTGCAGAAGATCTAGCAAAACATCCTGCTGTGGCATCGATCAATGAGAACAAGGGACGAAAACTGCACACGACAAGTTCATGGAATTTTCTTGGAGTAGAGCATGATGATGGAATCCCTGCAAATTCTATTTGGAATCTTGCAAGTTTTGGTGAATCTACAATCATTGGCAACCTTGACACAGGCGTATGGCCAGAATCAAAGAGTTTCAGTGATGAAGGATATGGGCCAATCCCAACAAGGAAGCTGATTGGAGCAAGGTATTTCAACAAAGGTTATGCAGCCTATGTGGGATCCCTCAATGCCAGCTTTGAAACGGCTAGGGACCATGATGGCCATGGAACTCACACTTTATCCACAGCTGGAGGCAACTTCATTTCTGGAGCTAGCGTTTTTGGGAATGGCAATGGAACTGCAAAAGGTGGATCCCCCAAAGCCCGTGTTGTTGCCTATAAGGTGTGCTGGCCTAAAATAGACTCTAGTGGTGGGTGTTTTGATGCAGACATCCTAGCTGCCATTGAAGCTGCTATTACTGATGGAGTTGATGTTCTCTCGATTTCGCTCGGAGGAGATTCCAAAGATTTTTTTGATGATGTAAATGCCATAGGGGCCTTCCATGCTGTTCAACATGGTATTATCGTTGTTTGCTCTGCTGGAAACTCAGGACCAGCTCCAGGGACTGTAGAAAATGTGGCACCCTGGCTTGTTACAGTGGGTGCTAGCACAATCAACAGACAGTTTACCAGTTATGTGGCCCTTGGAAACAAGACGCATATCAAGGGTGCAAGTCTTTCTGATAAAATATTGCCATCTCAGAAGTTCTATCCATTGATCAATTCTGTAGATGCAAAAGCCAGCAGCGTCTCTAACAACAACGCCCAACTGTGTGAGGAGGGGTCTCTTGATCCTAAAAAGGTAAAAGGGAAGATTCTAGTTTGCCTTAGAGGGGAAAATGGAAGAGTGGACAAGGGTTTTGTGGCTGCTCAAGCAGGTGCTGTTGGGATGATTCTAGCTAACAGTGAGCAAAATGGGGATGAACTTACAGCTGATGCACACCTACTTCCTGCTTCCCATGTGAGCTACACTGATGGCAGATCAGTCTACCAATACATCAACTCCACCAAAACTCCAATGGCTTACATGACTCACGTGAGGACAGAGCTGGGAATCAAACCAGCGCCAGTTATGGCTTCATTCTCATCGAGAGGTCCCAATACAATCGAGGAGTCAATACTCAAGCCTGATATAACAGCACCGGGTGTCAATATAATCGCAGCCTACTCTGAAGAAGCATCACCAAGCGGTTCATCATTTGATAACCGTCGAATTCCTTTTAATATAATATCTGGCACTTCCATGTCATGCCCCCACATTTCTGGTATTGTTGGCCTTCTCAAGACCCTTTATCCAAAATGGAGTCCAGCAGCCATCAAATCTGCAATCATGACCACAGCTGGAACCAGAGCCAATGACTTACATCCAATACTAAACACAACCAAGCTTAAAGCCAACCCATTCGCATACGGTGCAGGACATGTCCATCCAAACAGAGCAGTGAACCCTGGCCTTGTTTACGATCTTACCACCAAGGATTACTTGAATTTCTTATGTGCTCGAGGCTACAACGAAACACAAATCAGTAAATTCTCCAATACGTCCTTCGTTTGCTCAAAGTCATTCAAATTAAGAGATTTCAACTACCCATCTATCTCCATACCCAATCTGAAATCAGGCCGTGTGACAATCAAAAGAACAGTTAAGAATGTGGGAAGTCCAGGCACTTACACTGCTCGGGTCAAGGTACCTCCAGGAGTTTCAGTTTCAGTTGAGCCAAGTACATTGAAGTTTACTGGAATTGATGAAGAGAAGACTTTCAAAGTTGTATTGCGGAGCTTAGCGAACAACAAGCGTCGAGGCTATGTATTTGGATCACTGGCATGGTCAGATGGGAAGCATCATGTGAGAAGTCCAATTGCAGTGAATTTGGGATGA 2310 43.77 MLCYKAEKNRGSSSFIIHHSSFTSKKPWRLSINLHCFCCSFFLRCCKRPPLPPRRQAMIIHESAFKNKYGYIFNCPSQMSFFCSKEAIFYSYNRHINGFAAMLDQKAAEDLAKHPAVASINENKGRKLHTTSSWNFLGVEHDDGIPANSIWNLASFGESTIIGNLDTGVWPESKSFSDEGYGPIPTRKLIGARYFNKGYAAYVGSLNASFETARDHDGHGTHTLSTAGGNFISGASVFGNGNGTAKGGSPKARVVAYKVCWPKIDSSGGCFDADILAAIEAAITDGVDVLSISLGGDSKDFFDDVNAIGAFHAVQHGIIVVCSAGNSGPAPGTVENVAPWLVTVGASTINRQFTSYVALGNKTHIKGASLSDKILPSQKFYPLINSVDAKASSVSNNNAQLCEEGSLDPKKVKGKILVCLRGENGRVDKGFVAAQAGAVGMILANSEQNGDELTADAHLLPASHVSYTDGRSVYQYINSTKTPMAYMTHVRTELGIKPAPVMASFSSRGPNTIEESILKPDITAPGVNIIAAYSEEASPSGSSFDNRRIPFNIISGTSMSCPHISGIVGLLKTLYPKWSPAAIKSAIMTTAGTRANDLHPILNTTKLKANPFAYGAGHVHPNRAVNPGLVYDLTTKDYLNFLCARGYNETQISKFSNTSFVCSKSFKLRDFNYPSISIPNLKSGRVTIKRTVKNVGSPGTYTARVKVPPGVSVSVEPSTLKFTGIDEEKTFKVVLRSLANNKRRGYVFGSLAWSDGKHHVRSPIAVNLG 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39452459 39455996 - Maker00015804 Lcy6g1881 636325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1881 769 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 60 129 IPR037045 -
Lcy6g1881 769 ProSitePatterns Serine proteases, subtilase family, serine active site. 556 566 IPR023828 -
Lcy6g1881 769 Gene3D - 642 768 - -
Lcy6g1881 769 FunFam Subtilisin-like protease SBT1.5 642 769 - -
Lcy6g1881 769 Gene3D - 350 494 - -
Lcy6g1881 769 Gene3D Peptidase S8/S53 domain 160 638 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1881 769 Pfam Peptidase inhibitor I9 85 129 IPR010259 -
Lcy6g1881 769 SUPERFAMILY PA domain 409 489 IPR046450 -
Lcy6g1881 769 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 78 764 IPR045051 -
Lcy6g1881 769 CDD PA_subtilisin_like 356 485 - -
Lcy6g1881 769 Pfam Fibronectin type-III domain 670 766 IPR041469 -
Lcy6g1881 769 PRINTS Subtilisin serine protease family (S8) signature 215 228 IPR015500 -
Lcy6g1881 769 PRINTS Subtilisin serine protease family (S8) signature 555 571 IPR015500 -
Lcy6g1881 769 PRINTS Subtilisin serine protease family (S8) signature 157 176 IPR015500 -
Lcy6g1881 769 Pfam Subtilase family 157 617 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1881 769 SUPERFAMILY Subtilisin-like 128 629 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1881 769 CDD Peptidases_S8_3 127 591 IPR034197 -
Lcy6g1881 769 ProSiteProfiles Serine proteases, subtilase domain profile. 133 625 - -
Lcy6g1881 769 FunFam subtilisin-like protease SBT1.5 350 494 - -
Lcy6g1881 769 Pfam PA domain 396 471 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0408 Lcy-Chr4:4986760 Lcy6g1881 Lcy-Chr6:39452459 7.03e-317 dispersed
Lcy6g1866 Lcy-Chr6:38925391 Lcy6g1881 Lcy-Chr6:39452459 1.16E-302 dispersed
Lcy6g1881 Lcy-Chr6:39452459 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1881 Lcy-Chr6:39452459 Lcy6g1885 Lcy-Chr6:39505463 0 proximal
Lcy6g1880 Lcy-Chr6:39409989 Lcy6g1881 Lcy-Chr6:39452459 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1881 - - - 0.0