Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1885 ATGTATTATTTTAATCTCGCTCTCTTTCAATTAATTTTTTTTTTCCCTGGGTTCCATATACATAGTAAAAAAGTAGCTGAGGAAGCAATTTTCTACTCCTATGCAAGATGTTTCAATGGTTTTGCAGCCATACTCAATGAGAAAGAAGCAGCAGATTTAGCGAGAAGCCCACAAGTGATATCTGTGTTCGAAAACAAGGGAAGAAAAAAGCACACAACAGAGTCATGGAGTTTTCTTGGGGTGGAGAGTGAAGAAGGAATTCCTTCCAACTCCATTTGGAATCCAGCAGACTTTGGTCAAGATATGATTATAGCCAACATAGACACAGGTGTTTGGCCAGAATCGGAGAGCTTTAGCGACGAAGGGTATGGACCCATACCATCAAAGTGGAAAGGCACGTGTCCAACCGACGACACCAACTTTCAGTGTAACAGGAAGCTTATTGGAGGAAGGTATTTCTACAAAGGATATGAAGCCGAAGGAGGCATTCTCAACAATACTTCACGTTCCCTACGCGATTACGAAGGCCATGGAACCCACACTCTCTCCACCGCCGCCGGCAACTTCGTCCCCGGAGCCAACATTTTCGGCCATGGAAACGGCACGGCCAAAGGCGGCGCTCCAAAAGCCCGCGTCGCCGCCTACAAGGTCTGCTGGCCTTCCTTACCCTCCGGAGAGTGCTTCGATGCTGATACCCTCGCCGCCTTCGAAGCTGCTGTTGCCGACGGAGTCGACGTCATATCCGCTTCCATCGGTGGAGGCGACCAAGACTTCCTCGACGATCCACTTGCCATCGCCGCCTTCCATGCCGTTCAACAAGGCGTCGTCGTTGTCTGCTCCGCCGGAAACACAGGTCCTTTTCCGGGGACCGTCTCCAACGTCGCCCCGTGGGAGATCACCGTCGCTGCGAGCACCAACGGCAGAGATTTTGTCAGTTACGTCGCCCTTGGAAATAACATAAGTCTAAAGGGCACAAGCCTTTCTTCAGTTGGCGCATCAACTGGACAATTCTATCCATTGATCGGTTCTGGGGATGCGAGATTCAGCAATGTCAGCGATTACGATGCGCAATTTTGTGGTGAGGGAACGCTTGATCCGAACAAGGTAAAGGGGAAGATCTTGATTTGCCTTACAGGGGAACTTGCAGGGGTTGACAAGGGTTACCATGCTGCTCAAGCAGGTGCTGTTGGTATGATTGTGGCTAACGACATTGAAAACGGTGACAAAATCAATCCTGAGTTACATTTCCTTCCAGCTTCGGATATAACCTATAGCGATGCCGAATTGCTTTACCAATACATGAACTCCACCAAGACACCAGTGGCTCAGATAATGAATGTAACGATAGATGTGGGACTAAAACCAGCTCCAGTCATTGCTCCATTCTCATCCAGAGGTCCCAACCCATTAGAGAAGTCCATCCTCAAGCCTGACATAACAGCCCCGGGTGTGAACATTCTGGCGTCTTACCCCACCGGAAGAGCCCCGACAGCTTCCCTCTATGACCAACGGCGCATCCCGTTTAATATACTCGCCGGTACCTCCATGGCTTGCCCTCACATCTCTGGCATTGTAGCCCTTCTCAAGTTCATACATCCCGATTGGAGCCCTGCTGCAATCAAATCTGCCCTCATGACCACTGCCAAAACAAGTGACAACAACTTGCAGTCGATTCTCAACTCGACCAAACTCGAAGAAACCCCATTCGCTTATGGGGCAGGACATGTTCGCCCGAATGACGCAATGGACCCTGGCCTTGTTTATGATGCTTCAGTTGATGACTATTTGAATTTCTTGTGTGCTCGAGGTTACAATGCAAGTGAAATCAAAAGATTCTACGAGAAACCATTTGTTTGTGCAAAATCATTTGAAGTTACAGATCTCAACTATCCATCTATCTCAATTCCAAATTTAAATGTGAGTGCTCGGGTAACAATCAATAGAAGAGTTAAGAATGTGGGAAGTTCAGGCACATATATGGCGCGAGTCGAGGTGCCACCAGGAGTTGTGGTATCGGTTGAGCCAACTATGTTGCACTTTAGAAGTGTGGGTGAAGAGAAGGCATTCAAGGTCATATTTCAAAACACAGGAAATGTGGAACATGAAGGTTATATGTTCGGGACATTGATATGGACCGATGGGAAGCATTTTGTTAGAAGTCCTATTGCAATGAATTTGGGACGATGA 2187 47.83 MYYFNLALFQLIFFFPGFHIHSKKVAEEAIFYSYARCFNGFAAILNEKEAADLARSPQVISVFENKGRKKHTTESWSFLGVESEEGIPSNSIWNPADFGQDMIIANIDTGVWPESESFSDEGYGPIPSKWKGTCPTDDTNFQCNRKLIGGRYFYKGYEAEGGILNNTSRSLRDYEGHGTHTLSTAAGNFVPGANIFGHGNGTAKGGAPKARVAAYKVCWPSLPSGECFDADTLAAFEAAVADGVDVISASIGGGDQDFLDDPLAIAAFHAVQQGVVVVCSAGNTGPFPGTVSNVAPWEITVAASTNGRDFVSYVALGNNISLKGTSLSSVGASTGQFYPLIGSGDARFSNVSDYDAQFCGEGTLDPNKVKGKILICLTGELAGVDKGYHAAQAGAVGMIVANDIENGDKINPELHFLPASDITYSDAELLYQYMNSTKTPVAQIMNVTIDVGLKPAPVIAPFSSRGPNPLEKSILKPDITAPGVNILASYPTGRAPTASLYDQRRIPFNILAGTSMACPHISGIVALLKFIHPDWSPAAIKSALMTTAKTSDNNLQSILNSTKLEETPFAYGAGHVRPNDAMDPGLVYDASVDDYLNFLCARGYNASEIKRFYEKPFVCAKSFEVTDLNYPSISIPNLNVSARVTINRRVKNVGSSGTYMARVEVPPGVVVSVEPTMLHFRSVGEEKAFKVIFQNTGNVEHEGYMFGTLIWTDGKHFVRSPIAMNLGR 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39505463 39515155 - Maker00016041 Lcy6g1885 636329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1885 728 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 71 IPR037045 -
Lcy6g1885 728 CDD PA_subtilisin_like 313 444 - -
Lcy6g1885 728 SUPERFAMILY PA domain 358 440 IPR046450 -
Lcy6g1885 728 Pfam PA domain 358 430 IPR003137 -
Lcy6g1885 728 CDD Peptidases_S8_3 69 548 IPR034197 -
Lcy6g1885 728 SUPERFAMILY Subtilisin-like 71 586 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1885 728 ProSitePatterns Serine proteases, subtilase family, serine active site. 513 523 IPR023828 -
Lcy6g1885 728 ProSiteProfiles Serine proteases, subtilase domain profile. 75 582 - -
Lcy6g1885 728 FunFam Subtilisin-like protease SBT1.5 599 726 - -
Lcy6g1885 728 Gene3D - 599 726 - -
Lcy6g1885 728 Gene3D - 307 451 - -
Lcy6g1885 728 FunFam Subtilisin-like protease SBT1.5 101 330 - -
Lcy6g1885 728 Pfam Fibronectin type-III domain 627 723 IPR041469 -
Lcy6g1885 728 Pfam Peptidase inhibitor I9 24 70 IPR010259 -
Lcy6g1885 728 Gene3D Peptidase S8/S53 domain 101 595 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1885 728 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 722 IPR045051 -
Lcy6g1885 728 PRINTS Subtilisin serine protease family (S8) signature 512 528 IPR015500 -
Lcy6g1885 728 PRINTS Subtilisin serine protease family (S8) signature 173 186 IPR015500 -
Lcy6g1885 728 PRINTS Subtilisin serine protease family (S8) signature 99 118 IPR015500 -
Lcy6g1885 728 Pfam Subtilase family 99 557 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1885 728 FunFam subtilisin-like protease SBT1.5 307 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1885 Lcy-Chr6:39505463 Lcy6g1892 Lcy-Chr6:39553274 0 dispersed
Lcy6g1881 Lcy-Chr6:39452459 Lcy6g1885 Lcy-Chr6:39505463 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1885 - - - 0.0