Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1892 ATGGAGGCTAATTCCAATAATAAACTTCCTCCATTGCTTTTGTTGTTCTTCTTCTTGATCTCTCTATTGCAAACTTCTACCATTGCCACAGAAAAGTCTTACATCGTTTACTTGGGCTCGCAACTCTCCTCTTCTTTGGGTCCTTCCGCTTTGTCAGAACAATCCCGACAAGTGACAGCGTCTCATTATGATTTGTTGGGGTCAATGTTGGGAAGTAAAACGATGGCCCAGGAAGCGATTTTCTACTCCTACACTAGAAGTTTCAATGGTTTCGCAGCCAAACTTGATGAGAAGGAAGCAGCTGATCTAGCAAGAAACCCTAAGGTGATATCGGTGTTTGAAAATAAGCCGAGAAAATTGCATACAACACGATCGTGGAATTTTCTTGGGTTGGAAAATGATGCAGGAATTCCTTCAAACTCCATTTGGAATGCTGCCAAGTTTGGTCAAGATGTCATTCTAGCCAACGTCGACACAGGTGTTTGGCCGGAATCACAGAGCTTCAGTGACGAAGGGTATGGACCTGTGCCATCAAAGTGGAGGGGCATTTGTCAATCCGACTCCACCTTCCATTGCAATAAAAAGCTTATTGGAGCAAGGTATTTCTACAAAGGATATGAAGCCGCCGGAGGCGTCCTCAATGCCAGTTTACTAACAGTACGCGACCACGACGGCCATGGAACTCACACTCTCTCCACCGCCGCCGGAAACTTCGTCACCGGAGCCAACGTTTTCGGCCATGGAAACGGCACGGCCAAAGGCGGTGCTCCAAAAGCCCGCGTCGCTGCCTACAAAGTCTGCTGGCCTTCATTCATGGACGGACAGTGCTTCGATGCCGATACGCTCGCCGCCTTCGAAGCCGCCATCGCCGACGGAGTCGACGTCATATCGGTTTCCCTCGGTGGAACCGCCAATGAATTTGTCAACGATCCACTTTCTATAGTCGCCTTCCACGCCGTTCAACAAGGGATCGTCGTCGTCTTCTCCGCCGGAAACTCCGGTCCTTTTCCGGGGACCGTCACCAATGTCGCACCTTGGCAGATCACCGTCGCGGCGAGCACCGACGACAGAGATTTCGCCAGTTATGTCGCGCTTGGAAATAAGAAACACCTGAAGGGTGTAAGCCTTTCTTCAGTTGCCCCGTTACCCAAGAAGTTCTATCCATTGATCACTTCTGTGGATGCAAGATTCAGCAATGTCACCGAATACCATGCACAATTTTGTGACGAGGGGACGCTTGATCCGATCAAGGTGAAGGGGAAGATCTTGATCTGCCTTTCAGGGGAGATTGAAGGAATAGATAAGGGCTTCCAGGCGGCTCGAGCAGGTGCTGTGGGAGTGGTTGTGGCCAACGATCTAGAAGTGGGGAACGAAATCTATCCGGAGTTGCACTTCCTTCCAGCTTCCGATATTACCAGTAACGATAACCAATTGCTCCAGCAATACCTCAATTCCACCAAGACACCGGTGGCTCATTTAAAGAAGGTGATTACTCAGCTGGGAGTAAAACCAGCTCCAGTCATGGCTTCCTTCTCATCCAGAGGCCCCAACCCAATAGAGAGCTCCATCCTTAAGCCTGACATAACAGCGCCGGGTGTGAACATACTGGCTTCTTACCCCACTGGAAAGGCCCCGACCTCTTCCATCAGCGACCGACGGCGCATCCCGTTTAATGTAATCTCCGGCACCTCCATGTCCTGCCCTCACATCTCTGGCATCGCTGCCCTTCTCAAGTCCATTCATCCCGAATGGAGCCCTGCTGCCATCAAATCTGCCATTGTGACCACTGCCAAAACCAGAGGCAACAACTTGCAAACGATCCTCGACTCGAACAAACTTAGAGCCAGCCCATTCGCTTATGGCGCGGGACTTGTTAATCCAAATAATGCAATGGACCCTGGCCTTGTTTATGATACTACTGTCGATGACTATTTGAACTTCTTGTGTGCTCGAGGCTACAACGCAACGCAAATCAGACAATTCGACACGAAGCCATTTATATGTTCCAAATCATTCAAACTCACGGATCTCAACTACCCATCGATCTCGGTTGGGGAATTGAAAATTGGTGCTCCCGTGACAATCAATAGAAGAGTTAAGAATGTGGGAAATCCAGGCACATATGTTGCACGGGTCAAGGTGTCCCCCGGAGTTGCGGTTTCGGTCGAGCCGAGCACGTTGCAGTTTAGCAGTGTGGGTGAAGAGAAGGCCTTCAAGGTCGTGTTGCAAAACACAGGAAAAGTGACACGTAATGGCTATGTGTTTGGAACATTGATCTGGTCTGACGGGAAGCATTTTGTTAGAAGTCCTATGGCAATCGATTTGGAATAA 2331 49.51 MEANSNNKLPPLLLLFFFLISLLQTSTIATEKSYIVYLGSQLSSSLGPSALSEQSRQVTASHYDLLGSMLGSKTMAQEAIFYSYTRSFNGFAAKLDEKEAADLARNPKVISVFENKPRKLHTTRSWNFLGLENDAGIPSNSIWNAAKFGQDVILANVDTGVWPESQSFSDEGYGPVPSKWRGICQSDSTFHCNKKLIGARYFYKGYEAAGGVLNASLLTVRDHDGHGTHTLSTAAGNFVTGANVFGHGNGTAKGGAPKARVAAYKVCWPSFMDGQCFDADTLAAFEAAIADGVDVISVSLGGTANEFVNDPLSIVAFHAVQQGIVVVFSAGNSGPFPGTVTNVAPWQITVAASTDDRDFASYVALGNKKHLKGVSLSSVAPLPKKFYPLITSVDARFSNVTEYHAQFCDEGTLDPIKVKGKILICLSGEIEGIDKGFQAARAGAVGVVVANDLEVGNEIYPELHFLPASDITSNDNQLLQQYLNSTKTPVAHLKKVITQLGVKPAPVMASFSSRGPNPIESSILKPDITAPGVNILASYPTGKAPTSSISDRRRIPFNVISGTSMSCPHISGIAALLKSIHPEWSPAAIKSAIVTTAKTRGNNLQTILDSNKLRASPFAYGAGLVNPNNAMDPGLVYDTTVDDYLNFLCARGYNATQIRQFDTKPFICSKSFKLTDLNYPSISVGELKIGAPVTINRRVKNVGNPGTYVARVKVSPGVAVSVEPSTLQFSSVGEEKAFKVVLQNTGKVTRNGYVFGTLIWSDGKHFVRSPMAIDLE 776
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39553274 39559382 - Maker00015810 Lcy6g1892 636336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1892 776 CDD PA_subtilisin_like 362 491 - -
Lcy6g1892 776 Gene3D - 648 775 - -
Lcy6g1892 776 ProSiteProfiles Serine proteases, subtilase domain profile. 125 631 - -
Lcy6g1892 776 CDD Peptidases_S8_3 119 597 IPR034197 -
Lcy6g1892 776 FunFam subtilisin-like protease SBT1.5 356 500 - -
Lcy6g1892 776 Gene3D Peptidase S8/S53 domain 151 644 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1892 776 FunFam Subtilisin-like protease SBT1.5 648 776 - -
Lcy6g1892 776 Pfam Subtilase family 149 609 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1892 776 SUPERFAMILY PA domain 407 457 IPR046450 -
Lcy6g1892 776 Gene3D - 356 500 - -
Lcy6g1892 776 Pfam PA domain 408 475 IPR003137 -
Lcy6g1892 776 ProSitePatterns Serine proteases, subtilase family, serine active site. 562 572 IPR023828 -
Lcy6g1892 776 FunFam Subtilisin-like protease SBT5.3 23 121 - -
Lcy6g1892 776 SUPERFAMILY Subtilisin-like 120 635 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1892 776 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 121 IPR037045 -
Lcy6g1892 776 Pfam Peptidase inhibitor I9 33 121 IPR010259 -
Lcy6g1892 776 Pfam Fibronectin type-III domain 676 773 IPR041469 -
Lcy6g1892 776 PRINTS Subtilisin serine protease family (S8) signature 149 168 IPR015500 -
Lcy6g1892 776 PRINTS Subtilisin serine protease family (S8) signature 222 235 IPR015500 -
Lcy6g1892 776 PRINTS Subtilisin serine protease family (S8) signature 561 577 IPR015500 -
Lcy6g1892 776 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 34 771 IPR045051 -
Lcy6g1892 776 FunFam Subtilisin-like protease SBT1.5 151 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1885 Lcy-Chr6:39505463 Lcy6g1892 Lcy-Chr6:39553274 0 dispersed
Lcy6g1892 Lcy-Chr6:39553274 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1892 Lcy-Chr6:39553274 Lcy6g1893 Lcy-Chr6:39606876 0 tandem
Lcy5g1286 Lcy-Chr5:30433930 Lcy6g1892 Lcy-Chr6:39553274 2.07E-46 wgd
Lcy6g1892 Lcy-Chr6:39553274 Lcy9g0404 Lcy-Chr9:11378610 5.85E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1892 - - - 0.0