Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1893 ATGGAGTTTTCTTACATTTCTCTATTGCTTTTGTATTTCTTTTTCCTTCAAACATCTGCTCTCCCTAACAAAAAGGCAAGCATGTCTTACATTGTTTATTTGGGTTCGCACTCTTTTGGATCGAGCCCTACTATGTTTGATACTCAAAGCGCAACCAATTCCCAGTATAATTTATTAGGATCAGTCATGGCAAGCCCATTGGCAGCCAAACAATCAATTATCTACTCTTATAATAGATACATTAATGGTTTTGCTGCTGTACTCGACGAAAACGAAGTCATGGCTCTTGAAAAGAATCCAAGTGTGGTGTCGGTTTTTGAAAACAAGGCAAGAAAATTGCATACAACACGATCATGGAGCTTTCTTGGGGTCGATAGTGATAATGGAATTCCTCCAAACTCCATTTGGAAAGCTGCTAGGTTTGGAGAAGATACAATTATAGGGAACCTCGACACAGGTGTTTGGCCAGAATCCGAGAGCTTCAATGATGCAGGGTATGGCCCTATACCTTCAAGGTGGAAGGGAGCTTGTGAAGGTGGCGCCAACTTTACTTGCAACAGGAAGTTGATTGGGGCACGATATTTCTACCAAGGATTTGAAAGTGCAAATGGTCCTCAAAACTTTAACTTCAACACAGCACGAGACCAACAAGGCCATGGATCACACACATTGTCCACTGCTGGTGGCAACTTTGTCCCTGGAGCCAATGCCTTTGGCAATGGCAATGGAACTGCAAAAGGAGGTTCCCCTAAAGCTCGTGTTGTTGCCTACAAGGTATGTTGGCCTGTGACCGGTGAGGCCTGTTTCGATGCTGATATCCTAGCCGCTTTTGAAGCCGCCATTAGCGACGGTGTAGATGTGCTCTCGGTCTCTCTTGGCACAAGAGCTCAAGAGTTTGCTAATGACCCTGTTTCAATAGGGGCATTCCATGCCATTCAAGAAGGAATTGTTGTGGTTTGCTCAGCAGGAAATGAGGGTCCGTCTCCTGGGACTGTAACTAATGTATCTCCTTGGATGTTCACTGTTGGAGCTAGTTCCATCGATCGAGACTTTGTCAATTATGTCACTCTTGAAAACAAGAAGCAATTCAAGGGTTTGAGTCTTTCATCTGGAGGAATGCCAGAGGGTAAATTCTACCCTTTGATCAATGGTGTGGAAGCAAAAGTTACCAATGCCTCCGATAGCTTTGCCCAACTTTGCGAGGAGGGATCACTTGATTCCACAAAGGCAAAAGGGAAGATTGTAGTTTGTCTTCGAGGAGACAATTCAAGAGTGGCCAAGGGTTTTGAGGTTCTTCGTGTAGGTGGTGTCGGTATGATTCTAGTAAATGACGAGCTAGACGGATCGGCCCTTCTAGCTGAAGCACACTTTCTTCCTACTTCTCATGTGAGCTACACAGATGGACTTTCTATTGCTCAATATATGAACTCAACCGAAACACCTATGGCTTTCATAACCCAAGTAAGCACTGTGTTGGGAATCAAACCATCACCTGTCATGGCTGCATTCTCATCAAGAGGCCCCAATCCCATCGAAGAGACTATAATCAAGCCTGATATAACAGCACCAGGGATGAGCATAATCGCATCGGTCACAGAAGATGTAACAGCAACAAATCTTCCATTTGATATTCGTCGAGTGCCTTTTAACATTCAATCTGGAACTTCAATGTCTTGCCCACACATCGCAGGTGTTGCTGGCCTCCTCAAGACCCTTCATCCCACATGGAGTCCAGCAGCTATCAAATCTGCCATCATGACTACAGCCAAGACAAGAGACAACACCATGCATTCAATATTGAACAGCACCCGACTCAAGGGAAACCCATTTGATTATGGTGTAGGACATGTCTATCCTAATAATGCAATGGACCCCGGTCTTGTTTACGACACAACCGTCGACGACTACTTGAGCTTCTTATGTGCGCGAGGCTACAACTACTCCCAATTTAACAGATTCTCTACCAAGGTATTTGTTTGCCCCGAATCATTCGCAATCACAGATCTCAACTATCCATCAATCTCTGTCACAAACTTGACAATCGGTGTCCCAATGACAATCAATAGAAGAGTTAAGAATGTAGGAAGTCCAGGCACGTATGTTGCACGAGTGAAACCGCCCCCAGGAGTTGCAATTACGGTTGAGCCGAGTACGTTGCAATTCAACAATGTGGATGAAGAGAAGACTTTCAAAGTTGTATTTCGATACACAAAAAAAGGGCAACAACAAGATTATGTATTTGGGACTTTGGTATGGTCAGATGGGAAGCATTTTGTTAGAAGTCCCATCGCAGTAAAATTGGGGTGA 2307 44.26 MEFSYISLLLLYFFFLQTSALPNKKASMSYIVYLGSHSFGSSPTMFDTQSATNSQYNLLGSVMASPLAAKQSIIYSYNRYINGFAAVLDENEVMALEKNPSVVSVFENKARKLHTTRSWSFLGVDSDNGIPPNSIWKAARFGEDTIIGNLDTGVWPESESFNDAGYGPIPSRWKGACEGGANFTCNRKLIGARYFYQGFESANGPQNFNFNTARDQQGHGSHTLSTAGGNFVPGANAFGNGNGTAKGGSPKARVVAYKVCWPVTGEACFDADILAAFEAAISDGVDVLSVSLGTRAQEFANDPVSIGAFHAIQEGIVVVCSAGNEGPSPGTVTNVSPWMFTVGASSIDRDFVNYVTLENKKQFKGLSLSSGGMPEGKFYPLINGVEAKVTNASDSFAQLCEEGSLDSTKAKGKIVVCLRGDNSRVAKGFEVLRVGGVGMILVNDELDGSALLAEAHFLPTSHVSYTDGLSIAQYMNSTETPMAFITQVSTVLGIKPSPVMAAFSSRGPNPIEETIIKPDITAPGMSIIASVTEDVTATNLPFDIRRVPFNIQSGTSMSCPHIAGVAGLLKTLHPTWSPAAIKSAIMTTAKTRDNTMHSILNSTRLKGNPFDYGVGHVYPNNAMDPGLVYDTTVDDYLSFLCARGYNYSQFNRFSTKVFVCPESFAITDLNYPSISVTNLTIGVPMTINRRVKNVGSPGTYVARVKPPPGVAITVEPSTLQFNNVDEEKTFKVVFRYTKKGQQQDYVFGTLVWSDGKHFVRSPIAVKLG 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39606876 39617721 - Maker00016103 Lcy6g1893 636337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1893 768 Gene3D - 348 492 - -
Lcy6g1893 768 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 114 IPR037045 -
Lcy6g1893 768 Gene3D Peptidase S8/S53 domain 144 636 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1893 768 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Lcy6g1893 768 PRINTS Subtilisin serine protease family (S8) signature 215 228 IPR015500 -
Lcy6g1893 768 PRINTS Subtilisin serine protease family (S8) signature 553 569 IPR015500 -
Lcy6g1893 768 Pfam Subtilase family 142 593 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1893 768 Pfam Peptidase inhibitor I9 29 114 IPR010259 -
Lcy6g1893 768 Gene3D - 640 767 - -
Lcy6g1893 768 FunFam subtilisin-like protease SBT1.5 348 492 - -
Lcy6g1893 768 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 763 IPR045051 -
Lcy6g1893 768 FunFam Subtilisin-like protease SBT1.5 144 358 - -
Lcy6g1893 768 CDD PA_subtilisin_like 354 485 - -
Lcy6g1893 768 ProSiteProfiles Serine proteases, subtilase domain profile. 118 623 - -
Lcy6g1893 768 FunFam Subtilisin-like protease SBT1.5 640 768 - -
Lcy6g1893 768 FunFam Subtilisin-like protease SBT5.3 18 114 - -
Lcy6g1893 768 Pfam PA domain 399 471 IPR003137 -
Lcy6g1893 768 ProSitePatterns Serine proteases, subtilase family, serine active site. 554 564 IPR023828 -
Lcy6g1893 768 Pfam Fibronectin type-III domain 668 765 IPR041469 -
Lcy6g1893 768 CDD Peptidases_S8_3 112 589 IPR034197 -
Lcy6g1893 768 SUPERFAMILY Subtilisin-like 113 627 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1893 768 SUPERFAMILY PA domain 407 480 IPR046450 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1622 Lcy-Chr13:35170538 Lcy6g1893 Lcy-Chr6:39606876 6.73E-180 dispersed
Lcy6g1893 Lcy-Chr6:39606876 Lcy9g0548 Lcy-Chr9:17151572 1.06E-236 dispersed
Lcy6g1892 Lcy-Chr6:39553274 Lcy6g1893 Lcy-Chr6:39606876 0 tandem
Lcy6g1893 Lcy-Chr6:39606876 Lcy6g1894 Lcy-Chr6:39682684 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1893 - - - 0.0