Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy6g1894 ATGGAGTTTTCTTATATTTCTCCATTACTTTTGTTCTTCTTTTTGCTTCAAACATCTGCCATTCCTACTAAAAAGTCTTACATTGTTTATTTGGGATCGCATTCTAATGGATTGAATCCTACTGCATATAATCCCCAAGCTGCAACCGAGTCCCAATATGATCTATTAGGAACAGTCACGGGAAGCAAATTGACAGCCAAAGAATCAATTATCTACTCGTATAATAGATACATTAATGGTTTTGCTGCTGTACTTGACGAAAAAGAAGCTGCAGCTCTTGCAAAGAATCCAAATGTGGTGTCGGTTTTTGAAAACAAGGAAAGAAAATTGCATACAACACGATCATGGAGTTTTCTTGGGGTCGATAGTGATAATGGAATTCCTCCAAACTCCATTTGGAAAGCTGCTAGGTTTGGAGAAGATACAATTATAGGGAACCTCGACACAGGTGTTTGGCCAGAGTCCCAGAGCTTCAATGATGCAGGCTATGGCCCTGTACCTTCAAGGTGGAGGGGAGCTTGTGAAGGTGGCACTAACTTTCGTTGCAACAAGAAGTTAATTGGAGCACGATATTTCTACCAAGGATTTGCAAGCACACATGGTCCTATGAACAATACCTACGACACTGCACGAGACCATGAAGGCCATGGATCACATACTTTGTCTACTGCCGGTGGCAACTTTGTCCCTGGAGCCAATATCTTTGGCTATGCCAATGGGACTGCAAAAGGAGGTTCCCCAAAAGCTCGTGTTGCTGCCTACAAGGTGTGCTGGCCTGCTACCACTGGTGGCTGTTATGATTCCGATATCCTAGCTGGTTTCGAAGCCGCCATTGGCGACGGTGTTGATGTTCTCTCAGTCTCTCTTGGTACAGCAGCTCAAGAGTTCGCTTACGACTCTGTATCAATAGGGGCATTCCATGCAGTTCAACAAGGAATTGTCGTGGTTTGCTCGGCAGGTAATGATGGCCCTACTCCTGGCAGTGTCAGCAATGTATCTCCCTGGATGTTCACTGTTGGAGCTAGTTCCATTGACCGAGACTTCGTCAATTATGTGGCCCTTGGAAATAAGAAGCATTTGAAGGGTACAAGTCTTTCATCTGGAGGATTGCGAGGTGGTAAGTTCTACCCTTTGCTCAATGCTGCGGAAGCAAAAGCTGCCAATGCCTCTGATGAAGATGCGCAACTTTGCAAAGATGGATCCCTTGATCCCACAAAGGCAAAAGGGAAGATTGTAGTTTGCCTTCGAGGAGACAATGGAAGAGTGGACAAGGGTGTCGAGGTTCGTCGTGTCGGTGGTGTCGGTATGATTTTGGTAAATGCTGAGAAAGACGGATCAGACGTTGTAGCCGATCCGCACATACTTCCAGCTTCTCATCTAAGCTACGTTGATGGACTTCCTATCGCTCAATATATTAACTCGACCAAAACACCCATGGCTTTCATAACTCATGTAAAGACCGAGATGGGAATTAAACCATCACCTATCATGGCTGGATTCTCATCAAGAGGCCCTAATTCCATCACAGAGGCCATGATCAAGCCTGATATAACAGCACCGGGTATGAGTATACTCGCATCGGTCACGGAAGATGTAACTGCAACAAATTCGCCATTCGATACGCGTCGAGTGCCTTTTAATGTTGAATCTGGTACTTCAATGTCTTGCCCACACATCGCAGGTGTTGCTGGCCTCCTCAAGACCCTTTATCCCACATGGAGTCCAGGAGCAATCAAATCTGCCATCATGACTACAGCCAAGACAAGAGACAACACCATGCATTCAATATTGGACTCCACCAAAGTTAAGGCAACCCCGTTGGATTATGGTTCAGGACATGTCAATCCAAACAATGCAATGGACCCTGGTCTCGTTTATGACACGACCGTCGATGACTACATGAACTTCTTATGTGCGCGGGGCTACAACTCTCTCGCACTCAAGAAATTCTCTAACAAGCCATTTGTTTGCGCTAAATCATTTGAAATCACAGATCTCAACTACCCATCAATCTCGATCCCAAATTTGCAAATTGGTGCCCCAGTGACAATCAATAGAAGAGTTAAGAATGTCGGAAGTGCAGGCACGTATGTGGCACGAGTGAAGGTGCCACTAGGAGTTGCAGTTACAGTTGAGCCGAGTTCATTGCAATTTAACAGTGTAGGTGAAGAGAAAGCTTTCAAGCTTGTATTTCAAAACACTGGAAAAGTGAAGCGTCAAGGCTATGTGTTTGGTACATTGGTATGGTCAGATGGAAAACATTTTGTTAGAAGTCCTATTGCAGTGAAATTGGGATGA 2298 44.91 MEFSYISPLLLFFFLLQTSAIPTKKSYIVYLGSHSNGLNPTAYNPQAATESQYDLLGTVTGSKLTAKESIIYSYNRYINGFAAVLDEKEAAALAKNPNVVSVFENKERKLHTTRSWSFLGVDSDNGIPPNSIWKAARFGEDTIIGNLDTGVWPESQSFNDAGYGPVPSRWRGACEGGTNFRCNKKLIGARYFYQGFASTHGPMNNTYDTARDHEGHGSHTLSTAGGNFVPGANIFGYANGTAKGGSPKARVAAYKVCWPATTGGCYDSDILAGFEAAIGDGVDVLSVSLGTAAQEFAYDSVSIGAFHAVQQGIVVVCSAGNDGPTPGSVSNVSPWMFTVGASSIDRDFVNYVALGNKKHLKGTSLSSGGLRGGKFYPLLNAAEAKAANASDEDAQLCKDGSLDPTKAKGKIVVCLRGDNGRVDKGVEVRRVGGVGMILVNAEKDGSDVVADPHILPASHLSYVDGLPIAQYINSTKTPMAFITHVKTEMGIKPSPIMAGFSSRGPNSITEAMIKPDITAPGMSILASVTEDVTATNSPFDTRRVPFNVESGTSMSCPHIAGVAGLLKTLYPTWSPGAIKSAIMTTAKTRDNTMHSILDSTKVKATPLDYGSGHVNPNNAMDPGLVYDTTVDDYMNFLCARGYNSLALKKFSNKPFVCAKSFEITDLNYPSISIPNLQIGAPVTINRRVKNVGSAGTYVARVKVPLGVAVTVEPSSLQFNSVGEEKAFKLVFQNTGKVKRQGYVFGTLVWSDGKHFVRSPIAVKLG 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39682684 39688570 - Maker00016031 Lcy6g1894 636338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy6g1894 765 ProSitePatterns Serine proteases, subtilase family, serine active site. 551 561 IPR023828 -
Lcy6g1894 765 CDD Peptidases_S8_3 109 586 IPR034197 -
Lcy6g1894 765 Pfam Fibronectin type-III domain 665 762 IPR041469 -
Lcy6g1894 765 Pfam Peptidase inhibitor I9 26 111 IPR010259 -
Lcy6g1894 765 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 760 IPR045051 -
Lcy6g1894 765 SUPERFAMILY Subtilisin-like 110 624 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1894 765 FunFam Subtilisin-like protease SBT1.5 141 358 - -
Lcy6g1894 765 Pfam Subtilase family 139 590 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy6g1894 765 SUPERFAMILY Protease propeptides/inhibitors 25 108 - -
Lcy6g1894 765 PRINTS Subtilisin serine protease family (S8) signature 212 225 IPR015500 -
Lcy6g1894 765 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Lcy6g1894 765 PRINTS Subtilisin serine protease family (S8) signature 550 566 IPR015500 -
Lcy6g1894 765 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 111 IPR037045 -
Lcy6g1894 765 FunFam Subtilisin-like protease SBT5.3 16 111 - -
Lcy6g1894 765 FunFam subtilisin-like protease SBT1.5 345 489 - -
Lcy6g1894 765 CDD PA_subtilisin_like 351 482 - -
Lcy6g1894 765 Gene3D Peptidase S8/S53 domain 141 633 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy6g1894 765 FunFam Subtilisin-like protease SBT1.5 637 765 - -
Lcy6g1894 765 Gene3D - 637 764 - -
Lcy6g1894 765 Gene3D - 345 489 - -
Lcy6g1894 765 Pfam PA domain 385 467 IPR003137 -
Lcy6g1894 765 ProSiteProfiles Serine proteases, subtilase domain profile. 115 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy6g1869 Lcy-Chr6:39002815 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1880 Lcy-Chr6:39409989 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1881 Lcy-Chr6:39452459 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1892 Lcy-Chr6:39553274 Lcy6g1894 Lcy-Chr6:39682684 0 dispersed
Lcy6g1894 Lcy-Chr6:39682684 Lcy9g0548 Lcy-Chr9:17151572 1.91E-246 dispersed
Lcy6g1893 Lcy-Chr6:39606876 Lcy6g1894 Lcy-Chr6:39682684 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy6g1894 - - - 0.0